Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0264
         (412 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55715| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.49 
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              28   2.6  

>SB_55715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 30.7 bits (66), Expect = 0.49
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 189 NINKLRTSLRILFYYVFLNETIRTEIVYLIYNKVLSGFSSIVY 61
           N NKL   L I+F   F + T+R E V+ +  K+++   S  Y
Sbjct: 16  NQNKLALELFIIFIITFTSSTLRNEDVFSLMAKIMTMTLSFAY 58


>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 305 LVHID*SYKKYPYFSNYQSDISHNRTIIACSFFF 406
           ++H   +Y  +P++  Y S +SH  T +    FF
Sbjct: 764 VLHSHETYVSHPFYEPYASHVSHAATYVGAPHFF 797



 Score = 26.6 bits (56), Expect = 7.9
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +2

Query: 305  LVHID*SYKKYPYFSNYQSDISHNRTIIACSFFF 406
            ++H   +Y  +P+F  + S + H  T +    FF
Sbjct: 1422 IIHSHDTYVSHPFFEPFSSHVIHAGTYVGAPHFF 1455


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,767,008
Number of Sequences: 59808
Number of extensions: 186886
Number of successful extensions: 339
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)