Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0264
         (412 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14740.2 68416.m01864 PHD finger family protein similar to zi...    28   2.8  
At5g11290.1 68418.m01318 expressed protein contains Pfam profile...    27   4.9  
At5g28740.1 68418.m03530 transcription-coupled DNA repair protei...    27   6.5  
At3g14740.1 68416.m01863 PHD finger family protein similar to zi...    27   6.5  

>At3g14740.2 68416.m01864 PHD finger family protein similar to
           zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
           contains PHD-finger domain PF00628
          Length = 343

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +3

Query: 93  CYILDTRFQFVLFHLKIHNKIEFEVTCGVY*CLCSNSNHGSRP--VTPRFIHYHYSK*WI 266
           CY+   R   V+   ++  K+ F VTCG+   LC     G +   +   F + H +K W 
Sbjct: 267 CYLCKVRRGCVIECSEMRCKLAFHVTCGLKEDLCIEYREGKKSGGIVVGFCNEH-TKLW- 324

Query: 267 ILSRQEPSDK 296
              RQ+ S K
Sbjct: 325 --ERQQESGK 332


>At5g11290.1 68418.m01318 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 353

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = +3

Query: 141 IHNKIEFEVTCGVY*CLCSNSNHGSRPVTPRFIHYHYSK*WIILS--RQEPSDKRLDSFT 314
           + N++ + V  G++  L  + +    P+T R IH H+ K W+ +    +  SD ++  F 
Sbjct: 96  LENQLPYFVVEGMFGLLHVDYHRELPPLT-RIIHNHFKKFWMSIPSFSRSISDSKICHF- 153

Query: 315 LIDPTKNIHI 344
            +D  ++IH+
Sbjct: 154 -VDLLRSIHL 162


>At5g28740.1 68418.m03530 transcription-coupled DNA repair
           protein-related similar to XAB2 (XPA-binding protein 2)
           [Homo sapiens] GI:10566459
          Length = 917

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 180 KLRTSLRILFYYVFLNETIRT-EIVYLIYNKVL 85
           KL  SLR+  +YV L E++ T E    +Y K+L
Sbjct: 510 KLHRSLRLWSFYVDLEESLGTLESTRAVYEKIL 542


>At3g14740.1 68416.m01863 PHD finger family protein similar to
           zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
           contains PHD-finger domain PF00628
          Length = 341

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 93  CYILDTRFQFVLFHLKIHNKIEFEVTCGVY*CLCSNSNHGSR 218
           CY+   R   V+   ++  K+ F VTCG+   LC     G +
Sbjct: 267 CYLCKVRRGCVIECSEMRCKLAFHVTCGLKEDLCIEYREGKK 308


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,576,700
Number of Sequences: 28952
Number of extensions: 135203
Number of successful extensions: 253
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)