Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0263
         (407 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ...    26   8.5  
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ...    26   8.5  
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ...    26   8.5  
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ...    26   8.5  
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ...    26   8.5  

>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
           WD-40 repeats ; similar to LEUNIG
           (GP:11141605)[Arabidopsis thaliana]
          Length = 785

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 259 IDILLYEIXISKKLHNEFKTLL 324
           +D+ +Y+  + KKLHN  K+ +
Sbjct: 12  LDVYIYDYLVKKKLHNTAKSFM 33


>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
           WD-40 repeats ; similar to LEUNIG
           (GP:11141605)[Arabidopsis thaliana]
          Length = 787

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 259 IDILLYEIXISKKLHNEFKTLL 324
           +D+ +Y+  + KKLHN  K+ +
Sbjct: 12  LDVYIYDYLVKKKLHNTAKSFM 33


>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
           WD-40 repeats ; similar to LEUNIG
           (GP:11141605)[Arabidopsis thaliana]
          Length = 787

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 259 IDILLYEIXISKKLHNEFKTLL 324
           +D+ +Y+  + KKLHN  K+ +
Sbjct: 12  LDVYIYDYLVKKKLHNTAKSFM 33


>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
           WD-40 repeats ; similar to LEUNIG
           (GP:11141605)[Arabidopsis thaliana]
          Length = 787

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 259 IDILLYEIXISKKLHNEFKTLL 324
           +D+ +Y+  + KKLHN  K+ +
Sbjct: 12  LDVYIYDYLVKKKLHNTAKSFM 33


>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
           WD-40 repeats ; similar to LEUNIG
           (GP:11141605)[Arabidopsis thaliana]
          Length = 787

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 259 IDILLYEIXISKKLHNEFKTLL 324
           +D+ +Y+  + KKLHN  K+ +
Sbjct: 12  LDVYIYDYLVKKKLHNTAKSFM 33


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,150,873
Number of Sequences: 28952
Number of extensions: 81029
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)