Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0260
         (423 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0680 + 5797152-5797481,5797816-5798331,5798868-5798944,580...    27   8.2  
09_04_0139 + 15030753-15031208,15031298-15031523,15031599-150319...    27   8.2  
07_03_1515 - 27348999-27349559,27349738-27350070,27350461-273505...    27   8.2  

>12_01_0680 +
           5797152-5797481,5797816-5798331,5798868-5798944,
           5800706-5800778,5801689-5801786,5801868-5801964,
           5802451-5802516,5802717-5802764,5803223-5803297,
           5803913-5803970,5804553-5804611,5805098-5805160,
           5805161-5805205,5805490-5805588,5805713-5805760,
           5805884-5805931,5806008-5806064
          Length = 618

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 208 KQISLYRCEDSSTAHFNLSLTVTRDSSYVR 119
           KQ+ L  C  +   HFN++LT  + ++++R
Sbjct: 42  KQVHLKACAKALNDHFNINLTSDQITNHIR 71


>09_04_0139 +
           15030753-15031208,15031298-15031523,15031599-15031981,
           15032353-15032685,15032902-15033010,15033089-15033465
          Length = 627

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 208 KQISLYRCEDSSTAHFNLSLTVTRDSSYVR 119
           KQ+ L  C  +   HFN++LT  + ++++R
Sbjct: 398 KQVHLKACAKALNDHFNINLTSDQITNHIR 427


>07_03_1515 -
           27348999-27349559,27349738-27350070,27350461-27350574,
           27350911-27351141,27351231-27351686
          Length = 564

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 208 KQISLYRCEDSSTAHFNLSLTVTRDSSYVR 119
           KQ+ L  C  +   HFN++LT  + ++++R
Sbjct: 310 KQVHLKACAKALNDHFNINLTSDQINNHIR 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,203,576
Number of Sequences: 37544
Number of extensions: 144868
Number of successful extensions: 188
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)