Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0260
         (423 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18832| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_51260| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_2557| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.5  

>SB_18832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 277 HHRPKWKVIIEYDLFHSFHIFFIKQISLYRCEDSSTAHFNLSLTVT 140
           H   KW   + +     FH+F  + I+    + SSTA   L LT T
Sbjct: 3   HEPEKWPFHVSWTEEWPFHVFEYRNIASKNRKYSSTASKRLHLTFT 48


>SB_51260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 415 LYDKYSFNLKTFTVEILN*LHPATLTSLYSIILSDI 308
           L D YS +L       L+ ++P  L+S+YS  LSDI
Sbjct: 18  LSDIYSTDLSDIYPTDLSDIYPTYLSSIYSTDLSDI 53


>SB_2557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 627

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 265 KWKVIIEYDLFHSFHIFFIKQISLYRCEDSSTAHFNLSLTV 143
           +W+ II   L+ +    FI+ I L   + SS ++FN ++ +
Sbjct: 224 QWEEIISKHLWTAVSTHFIENIYLPAAQSSSASNFNTAVDI 264


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,345,200
Number of Sequences: 59808
Number of extensions: 187543
Number of successful extensions: 235
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)