Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0194
(379 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P63162 Cluster: Small nuclear ribonucleoprotein-associa... 150 7e-36
UniRef50_Q4TAB6 Cluster: Chromosome undetermined SCAF7390, whole... 141 3e-33
UniRef50_Q9FI15 Cluster: Similarity to small nuclear ribonucleop... 126 2e-28
UniRef50_A7ANM8 Cluster: Sm domain containing protein; n=1; Babe... 112 2e-24
UniRef50_Q55A45 Cluster: Putative small nuclear ribonucleopartic... 109 1e-23
UniRef50_UPI0000DA295F Cluster: PREDICTED: similar to small nucl... 98 5e-20
UniRef50_Q4N5C8 Cluster: Small nuclear ribonucleoprotein B, puta... 97 1e-19
UniRef50_Q8ILU8 Cluster: Ribonucleoprotein, putative; n=2; Plasm... 93 2e-18
UniRef50_Q6P0Y5 Cluster: Putative uncharacterized protein; n=1; ... 92 4e-18
UniRef50_Q5CME6 Cluster: Similar to small nuclear ribonucleoprot... 91 5e-18
UniRef50_UPI00015561AA Cluster: PREDICTED: similar to Small nucl... 89 3e-17
UniRef50_Q4YVP4 Cluster: Ribonucleoprotein, putative; n=3; Plasm... 89 3e-17
UniRef50_Q10163 Cluster: Uncharacterized protein C26A3.08; n=38;... 87 1e-16
UniRef50_Q4WP21 Cluster: Small nuclear ribonucleoprotein SmB, pu... 86 2e-16
UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167, w... 85 3e-16
UniRef50_A2EG20 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 85 4e-16
UniRef50_A3LXX4 Cluster: Predicted protein; n=3; Saccharomycetac... 78 5e-14
UniRef50_Q59KX5 Cluster: Potential spliceosomal snRNA Sm core bi... 72 4e-12
UniRef50_UPI0000499A4F Cluster: small nuclear ribonucleoprotein ... 71 5e-12
UniRef50_Q6CWY1 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 70 1e-11
UniRef50_Q4P7M4 Cluster: Putative uncharacterized protein; n=1; ... 70 1e-11
UniRef50_P40018 Cluster: Small nuclear ribonucleoprotein-associa... 69 4e-11
UniRef50_Q4D159 Cluster: Small nuclear ribonucleoprotein protein... 60 1e-08
UniRef50_A7T7F0 Cluster: Predicted protein; n=3; Eumetazoa|Rep: ... 58 7e-08
UniRef50_Q755T6 Cluster: AER432Cp; n=1; Eremothecium gossypii|Re... 52 5e-06
UniRef50_A5E144 Cluster: Putative uncharacterized protein; n=1; ... 52 5e-06
UniRef50_A2BIG9 Cluster: LSM domain-containing protein 1; n=14; ... 48 4e-05
UniRef50_Q9W087 Cluster: CG2021-PA; n=14; Eukaryota|Rep: CG2021-... 47 1e-04
UniRef50_UPI0000513250 Cluster: PREDICTED: similar to CG31950-PA... 47 1e-04
UniRef50_Q4V620 Cluster: IP06106p; n=3; Sophophora|Rep: IP06106p... 47 1e-04
UniRef50_UPI0000D55DF4 Cluster: PREDICTED: similar to CG31950-PA... 46 2e-04
UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4; Eu... 45 4e-04
UniRef50_Q9BRA0 Cluster: LSM domain-containing protein 1; n=12; ... 45 4e-04
UniRef50_P47017 Cluster: Sm-like protein LSm1; n=11; Saccharomyc... 45 5e-04
UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core, ... 43 0.002
UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4; T... 43 0.002
UniRef50_Q701X8 Cluster: Putative uncharacterized protein; n=1; ... 42 0.004
UniRef50_Q3LW01 Cluster: MRNA splicing factor; n=1; Bigelowiella... 42 0.005
UniRef50_Q5K8A9 Cluster: RNA cap binding protein, putative; n=1;... 41 0.007
UniRef50_Q4MZU2 Cluster: U6 snRNA-associated Sm-like protein LSm... 41 0.009
UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm... 41 0.009
UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm... 40 0.012
UniRef50_Q014C2 Cluster: Small Nuclear ribonucleoprotein splicin... 40 0.015
UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm... 40 0.015
UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 40 0.020
UniRef50_Q4Z0C4 Cluster: U6 snRNA-associated Sm-like protein, pu... 39 0.027
UniRef50_Q4MYV9 Cluster: U6 snRNA-associated protein, putative; ... 39 0.027
UniRef50_Q74ZR8 Cluster: AGR130Wp; n=2; Saccharomycetales|Rep: A... 39 0.027
UniRef50_Q8IGW7 Cluster: RE11655p; n=12; Eukaryota|Rep: RE11655p... 39 0.035
UniRef50_A4VDT4 Cluster: Putative uncharacterized protein; n=1; ... 39 0.035
UniRef50_Q8SR04 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN D2; n=1... 39 0.035
UniRef50_O74483 Cluster: U6 snRNA-associated Sm-like protein LSm... 39 0.035
UniRef50_A5K5F8 Cluster: U6 snRNA-associated Sm-like protein LSm... 38 0.047
UniRef50_A6RWH0 Cluster: Predicted protein; n=10; Pezizomycotina... 38 0.062
UniRef50_Q9AVX5 Cluster: Small nuclear ribonucleoprotein SM D2; ... 38 0.082
UniRef50_P53905 Cluster: U6 snRNA-associated Sm-like protein LSm... 38 0.082
UniRef50_A7AWS6 Cluster: Small nuclear ribonucleoprotein, putati... 37 0.11
UniRef50_A2E014 Cluster: Sm protein; n=2; Trichomonas vaginalis ... 37 0.11
UniRef50_A0D2M7 Cluster: Chromosome undetermined scaffold_35, wh... 37 0.11
UniRef50_A2FU85 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 37 0.14
UniRef50_A1CDT1 Cluster: Small nuclear ribonucleoprotein SmE, pu... 37 0.14
UniRef50_Q8TQX4 Cluster: Sm protein; n=8; Archaea|Rep: Sm protei... 37 0.14
UniRef50_P62310 Cluster: U6 snRNA-associated Sm-like protein LSm... 37 0.14
UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1; Ae... 36 0.19
UniRef50_Q6NNL2 Cluster: At4g18372; n=4; Magnoliophyta|Rep: At4g... 36 0.33
UniRef50_Q3LVZ4 Cluster: MRNA splicing factor; n=1; Bigelowiella... 36 0.33
UniRef50_A7P4Z8 Cluster: Chromosome chr4 scaffold_6, whole genom... 36 0.33
UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1; ... 36 0.33
UniRef50_Q8IB34 Cluster: Ribonucleoprotein, putative; n=1; Plasm... 36 0.33
UniRef50_A3FQL7 Cluster: Small nuclear ribonucleoprotein; n=2; C... 36 0.33
UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep... 36 0.33
UniRef50_A7DRH4 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 36 0.33
UniRef50_A2X0E3 Cluster: Putative uncharacterized protein; n=2; ... 35 0.44
UniRef50_Q54W83 Cluster: Putative uncharacterized protein; n=1; ... 35 0.44
UniRef50_Q4UC24 Cluster: U6 snRNA-associated Sm-like potein, put... 35 0.44
UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1... 35 0.44
UniRef50_Q9UK45 Cluster: U6 snRNA-associated Sm-like protein LSm... 35 0.44
UniRef50_A4S1J9 Cluster: Predicted protein; n=2; Ostreococcus|Re... 35 0.58
UniRef50_Q54HH8 Cluster: Putative small nuclear ribonucleopartic... 35 0.58
UniRef50_P62304 Cluster: Small nuclear ribonucleoprotein E; n=51... 35 0.58
UniRef50_Q5CLJ8 Cluster: U6 snRNA-associated sm-like protein; n=... 34 0.76
UniRef50_Q4Q3L7 Cluster: Small nuclear ribonucleoprotein SmD2; n... 34 0.76
UniRef50_Q20229 Cluster: Putative uncharacterized protein lsm-1;... 34 0.76
UniRef50_Q5KN63 Cluster: Sm-like protein, putative; n=1; Filobas... 34 0.76
UniRef50_Q06217 Cluster: Small nuclear ribonucleoprotein Sm D2; ... 34 0.76
UniRef50_Q00XA2 Cluster: Putative small nuclear ribonucleoprotei... 34 1.0
UniRef50_A5K5Q0 Cluster: U6 snRNA-associated Sm-like protein LSm... 34 1.0
UniRef50_A3FQF0 Cluster: Putative uncharacterized protein; n=2; ... 34 1.0
UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog... 34 1.0
UniRef50_Q7ZUG0 Cluster: Small nuclear ribonucleoprotein E; n=18... 34 1.0
UniRef50_Q01DG8 Cluster: Small nuclear ribonucleoprotein D2-like... 33 1.3
UniRef50_Q6BIX4 Cluster: Similar to CA2640|IPF2930 Candida albic... 33 1.3
UniRef50_A3DP35 Cluster: Like-Sm ribonucleoprotein, core; n=1; S... 33 1.3
UniRef50_Q0WMZ9 Cluster: Sm-like protein; n=19; Eukaryota|Rep: S... 33 1.8
UniRef50_Q7R4T3 Cluster: GLP_440_43387_42998; n=1; Giardia lambl... 33 2.3
UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia... 33 2.3
UniRef50_A2DQD7 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 33 2.3
UniRef50_Q976F2 Cluster: 90aa long hypothetical small nuclear ri... 33 2.3
UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein, ... 32 3.1
UniRef50_Q1DNR5 Cluster: Putative uncharacterized protein; n=1; ... 32 3.1
UniRef50_Q0ULJ4 Cluster: Putative uncharacterized protein; n=1; ... 32 3.1
UniRef50_O74499 Cluster: U6 snRNP-associated protein Lsm7; n=19;... 32 3.1
UniRef50_A5E5I9 Cluster: Methionine aminopeptidase; n=2; Sacchar... 32 3.1
UniRef50_Q9Y7M4 Cluster: Probable U6 snRNA-associated Sm-like pr... 32 3.1
UniRef50_UPI0001556653 Cluster: PREDICTED: similar to sec13-like... 32 4.1
UniRef50_Q96EE3-2 Cluster: Isoform A of Q96EE3 ; n=31; Coelomata... 32 4.1
UniRef50_Q47U61 Cluster: Bacterial sugar transferase domain prot... 32 4.1
UniRef50_A3FQK4 Cluster: Small nuclear ribonucleoprotein, putati... 32 4.1
UniRef50_A0D0Y9 Cluster: Chromosome undetermined scaffold_33, wh... 32 4.1
UniRef50_Q4PB34 Cluster: Putative uncharacterized protein; n=3; ... 32 4.1
UniRef50_Q96EE3 Cluster: Nucleoporin SEH1-like; n=19; Eumetazoa|... 32 4.1
UniRef50_Q12330 Cluster: Small nuclear ribonucleoprotein E; n=3;... 32 4.1
UniRef50_UPI0000E8142D Cluster: PREDICTED: death inducer-obliter... 31 5.4
UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein polypep... 31 5.4
UniRef50_A7PDU1 Cluster: Chromosome chr11 scaffold_13, whole gen... 31 5.4
UniRef50_A4S5K5 Cluster: Predicted protein; n=1; Ostreococcus lu... 31 5.4
UniRef50_Q6QA14 Cluster: Lsm8p; n=6; Trypanosomatidae|Rep: Lsm8p... 31 5.4
UniRef50_Q23CZ4 Cluster: Putative uncharacterized protein; n=2; ... 31 5.4
UniRef50_Q2HFG8 Cluster: Putative uncharacterized protein; n=1; ... 31 5.4
UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)... 31 5.4
UniRef50_A4FX23 Cluster: Like-Sm ribonucleoprotein, core; n=4; M... 31 5.4
UniRef50_UPI0000F2B720 Cluster: PREDICTED: similar to RNA polyme... 31 7.1
UniRef50_UPI000021D358 Cluster: PREDICTED: similar to LSM3 homol... 31 7.1
UniRef50_Q7RDC9 Cluster: Putative uncharacterized protein PY0549... 31 7.1
UniRef50_Q9P779 Cluster: Autophagy associated protein; n=1; Schi... 31 7.1
UniRef50_Q75CP4 Cluster: ACL125Cp; n=1; Eremothecium gossypii|Re... 31 7.1
UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces cere... 31 7.1
UniRef50_A7TII8 Cluster: Putative uncharacterized protein; n=1; ... 31 7.1
UniRef50_A4RG53 Cluster: Predicted protein; n=1; Magnaporthe gri... 31 7.1
UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm... 31 7.1
UniRef50_UPI00004984BB Cluster: small nuclear ribonucleoprotein;... 31 9.4
UniRef50_UPI000023D4AE Cluster: hypothetical protein FG10837.1; ... 31 9.4
UniRef50_Q22U59 Cluster: Putative uncharacterized protein; n=2; ... 31 9.4
UniRef50_Q9C252 Cluster: Probable small nuclear ribonucleoprotei... 31 9.4
UniRef50_Q7SG45 Cluster: Predicted protein; n=1; Neurospora cras... 31 9.4
UniRef50_Q4PED8 Cluster: Putative uncharacterized protein; n=1; ... 31 9.4
UniRef50_Q97XM2 Cluster: Putative uncharacterized protein; n=1; ... 31 9.4
>UniRef50_P63162 Cluster: Small nuclear ribonucleoprotein-associated
protein N; n=94; Eukaryota|Rep: Small nuclear
ribonucleoprotein-associated protein N - Homo sapiens
(Human)
Length = 240
Score = 150 bits (364), Expect = 7e-36
Identities = 70/102 (68%), Positives = 82/102 (80%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
MT+GK++KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPPPQEGSASRSLTGSYG 374
REEKR LG VLLRGEN+VS+T+EGPPP G A L G+ G
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG 102
>UniRef50_Q4TAB6 Cluster: Chromosome undetermined SCAF7390, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF7390,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 268
Score = 141 bits (342), Expect = 3e-33
Identities = 64/86 (74%), Positives = 75/86 (87%)
Frame = +3
Query: 72 TIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR 251
T+GK++KM QHI++R+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK KNSK +R
Sbjct: 9 TVGKSSKMLQHIDFRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPER 68
Query: 252 EEKRTLGFVLLRGENIVSLTIEGPPP 329
EEKR LG VLLRGEN+VS+T+EGPPP
Sbjct: 69 EEKRVLGLVLLRGENLVSMTVEGPPP 94
>UniRef50_Q9FI15 Cluster: Similarity to small nuclear
ribonucleoprotein; n=6; Viridiplantae|Rep: Similarity to
small nuclear ribonucleoprotein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 254
Score = 126 bits (303), Expect = 2e-28
Identities = 60/106 (56%), Positives = 77/106 (72%), Gaps = 4/106 (3%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKI---KSKNSK 239
M++ K++KM Q INYR+RV +QD R I F AFD+HMNL+LGDCEEFRK+ K
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60
Query: 240 TADREEKRTLGFVLLRGENIVSLTIEGPPPPQEGSA-SRSLTGSYG 374
+REE+RTLG VLLRGE ++S+T+EGPPPP+E A S S+T G
Sbjct: 61 NEEREERRTLGLVLLRGEEVISMTVEGPPPPEESRAKSGSVTAVAG 106
>UniRef50_A7ANM8 Cluster: Sm domain containing protein; n=1; Babesia
bovis|Rep: Sm domain containing protein - Babesia bovis
Length = 159
Score = 112 bits (269), Expect = 2e-24
Identities = 52/83 (62%), Positives = 60/83 (72%)
Frame = +3
Query: 78 GKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREE 257
GKN +MQQ + YRVRV ++D R F+ TF AFDKHMNL+L DCEEFR K K E
Sbjct: 3 GKNTRMQQWLQYRVRVAIKDGRKFVGTFIAFDKHMNLVLADCEEFRITKGKGPDKQKVEL 62
Query: 258 KRTLGFVLLRGENIVSLTIEGPP 326
KRTLGF++LRGENIVS T E PP
Sbjct: 63 KRTLGFIMLRGENIVSFTAEAPP 85
>UniRef50_Q55A45 Cluster: Putative small nuclear
ribonucleoparticle-associated protein; n=2;
Dictyostelium discoideum|Rep: Putative small nuclear
ribonucleoparticle-associated protein - Dictyostelium
discoideum AX4
Length = 274
Score = 109 bits (263), Expect = 1e-23
Identities = 49/92 (53%), Positives = 69/92 (75%)
Frame = +3
Query: 81 KNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEK 260
K++KM Q+INYR+RV +QD R + F AFDKHMN+++ D EEFR+I+ K + DREEK
Sbjct: 6 KSSKMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKE--DREEK 63
Query: 261 RTLGFVLLRGENIVSLTIEGPPPPQEGSASRS 356
RTLG +L+RGE +VS+++E PPP + A+ S
Sbjct: 64 RTLGMILIRGETVVSMSVEAPPPEEAKLAATS 95
>UniRef50_UPI0000DA295F Cluster: PREDICTED: similar to small nuclear
ribonucleoparticle-associated protein; n=1; Rattus
norvegicus|Rep: PREDICTED: similar to small nuclear
ribonucleoparticle-associated protein - Rattus
norvegicus
Length = 195
Score = 97.9 bits (233), Expect = 5e-20
Identities = 45/68 (66%), Positives = 51/68 (75%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
MT+GK++KM QHI+YR R LQD R FI FKAFDKHMN IL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRTRCFLQDGRIFIGIFKAFDKHMNSILCDCDEFRKIKPKNEKQTE 60
Query: 249 REEKRTLG 272
EEKR G
Sbjct: 61 CEEKRVFG 68
>UniRef50_Q4N5C8 Cluster: Small nuclear ribonucleoprotein B,
putative; n=3; Eukaryota|Rep: Small nuclear
ribonucleoprotein B, putative - Theileria parva
Length = 155
Score = 97.1 bits (231), Expect = 1e-19
Identities = 47/82 (57%), Positives = 57/82 (69%)
Frame = +3
Query: 78 GKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREE 257
GKN +MQ + Y VRV L+D+R F+ T A+DK+MNL+L DCEEFR K+ E
Sbjct: 3 GKNTRMQHWLQYNVRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEFRMTLGKDKNRT--EV 60
Query: 258 KRTLGFVLLRGENIVSLTIEGP 323
KRTLGFVLLRGENIVS T + P
Sbjct: 61 KRTLGFVLLRGENIVSFTAKSP 82
>UniRef50_Q8ILU8 Cluster: Ribonucleoprotein, putative; n=2;
Plasmodium|Rep: Ribonucleoprotein, putative - Plasmodium
falciparum (isolate 3D7)
Length = 201
Score = 93.1 bits (221), Expect = 2e-18
Identities = 41/84 (48%), Positives = 62/84 (73%)
Frame = +3
Query: 75 IGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADRE 254
+GKN++++ + YRVRV + D+R F+ TF ++D+HMN++L D EEFRK+KS+ + +E
Sbjct: 1 MGKNSRLETWLQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEEFRKVKSQENSL--KE 58
Query: 255 EKRTLGFVLLRGENIVSLTIEGPP 326
KR +G +L+RGENIVS T E P
Sbjct: 59 IKRVVGLILIRGENIVSFTAEQAP 82
>UniRef50_Q6P0Y5 Cluster: Putative uncharacterized protein; n=1;
Homo sapiens|Rep: Putative uncharacterized protein -
Homo sapiens (Human)
Length = 208
Score = 91.9 bits (218), Expect = 4e-18
Identities = 42/68 (61%), Positives = 53/68 (77%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
+T+GK++KM H ++R+R ILQD R FI TFKAFDKHMN+I DC+EFRK+K KN+K
Sbjct: 41 VTVGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPA 100
Query: 249 REEKRTLG 272
REEKR G
Sbjct: 101 REEKRVSG 108
>UniRef50_Q5CME6 Cluster: Similar to small nuclear
ribonucleoprotein; n=2; Cryptosporidium|Rep: Similar to
small nuclear ribonucleoprotein - Cryptosporidium
hominis
Length = 139
Score = 91.5 bits (217), Expect = 5e-18
Identities = 40/81 (49%), Positives = 56/81 (69%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
MQ++INYR+RV +QD R + AFD+HMNL+L DC+E+R++K +E KR+LG
Sbjct: 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRVKKGEE---PKELKRSLG 57
Query: 273 FVLLRGENIVSLTIEGPPPPQ 335
++LRGENIV+ E PP Q
Sbjct: 58 LIMLRGENIVTFVAEAPPKNQ 78
>UniRef50_UPI00015561AA Cluster: PREDICTED: similar to Small nuclear
ribonucleoprotein polypeptide N; n=1; Ornithorhynchus
anatinus|Rep: PREDICTED: similar to Small nuclear
ribonucleoprotein polypeptide N - Ornithorhynchus
anatinus
Length = 154
Score = 89.0 bits (211), Expect = 3e-17
Identities = 40/52 (76%), Positives = 46/52 (88%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIK 224
MT+GK++KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK
Sbjct: 103 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIK 154
>UniRef50_Q4YVP4 Cluster: Ribonucleoprotein, putative; n=3;
Plasmodium (Vinckeia)|Rep: Ribonucleoprotein, putative -
Plasmodium berghei
Length = 194
Score = 88.6 bits (210), Expect = 3e-17
Identities = 38/84 (45%), Positives = 61/84 (72%)
Frame = +3
Query: 75 IGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADRE 254
+GKN +++ + YRVRV + D+R ++ TF ++D+HMN++L D EEFR++K+K + +E
Sbjct: 1 MGKNYRLESWLQYRVRVTISDTRYYVGTFLSYDRHMNIVLVDAEEFRRVKNKENNF--KE 58
Query: 255 EKRTLGFVLLRGENIVSLTIEGPP 326
KR +G +L+RG+NIVS T E P
Sbjct: 59 IKRVVGLILIRGDNIVSFTAERAP 82
>UniRef50_Q10163 Cluster: Uncharacterized protein C26A3.08; n=38;
Fungi/Metazoa group|Rep: Uncharacterized protein
C26A3.08 - Schizosaccharomyces pombe (Fission yeast)
Length = 147
Score = 86.6 bits (205), Expect = 1e-16
Identities = 43/93 (46%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Frame = +3
Query: 90 KMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKN-SKTADREEKRT 266
KM +N+ + V +D RTF+ AFD MNL+L DC+E+R IK +N + EEKR
Sbjct: 5 KMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRM 64
Query: 267 LGFVLLRGENIVSLTIEGPPPPQEGSASRSLTG 365
LG V+LRGE IVSL+++GPPP L+G
Sbjct: 65 LGLVILRGEFIVSLSVQGPPPMDPSMRGSLLSG 97
>UniRef50_Q4WP21 Cluster: Small nuclear ribonucleoprotein SmB,
putative; n=2; Eukaryota|Rep: Small nuclear
ribonucleoprotein SmB, putative - Aspergillus fumigatus
(Sartorya fumigata)
Length = 357
Score = 85.8 bits (203), Expect = 2e-16
Identities = 44/98 (44%), Positives = 62/98 (63%), Gaps = 8/98 (8%)
Frame = +3
Query: 105 INYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSK--------NSKTADREEK 260
INYR+R+ L D R AFDKHMNL+L D EEFR++K K N+ + EEK
Sbjct: 131 INYRMRITLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAGPSNAPLVEAEEK 190
Query: 261 RTLGFVLLRGENIVSLTIEGPPPPQEGSASRSLTGSYG 374
RTLG ++RG ++VS +++GPPP + ++R TG+ G
Sbjct: 191 RTLGLTIVRGTHVVSCSVDGPPPAE--PSARLGTGAPG 226
>UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167,
whole genome shotgun sequence; n=3;
Oligohymenophorea|Rep: Chromosome undetermined
scaffold_167, whole genome shotgun sequence - Paramecium
tetraurelia
Length = 138
Score = 85.4 bits (202), Expect = 3e-16
Identities = 41/90 (45%), Positives = 61/90 (67%), Gaps = 2/90 (2%)
Frame = +3
Query: 75 IGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADRE 254
+ + +K Q I+YRVR+ L D R + TF AFDKH+N+IL +CEE+R + + E
Sbjct: 1 MSQKSKFFQWIDYRVRITLGDGRMLVGTFLAFDKHLNVILSECEEYR---IRKQGIHEIE 57
Query: 255 EKRTLGFVLLRGENIVSLTIEGPP--PPQE 338
KRTLG +++RG+NI+SL+ E PP PP++
Sbjct: 58 TKRTLGMIIVRGDNIISLSAEAPPHQPPKK 87
>UniRef50_A2EG20 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 158
Score = 85.0 bits (201), Expect = 4e-16
Identities = 38/100 (38%), Positives = 60/100 (60%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
M + +K+ + IN RV+V++ D R F+ AFD H N++L DCEE+R++ + +
Sbjct: 1 MQAPRGSKLSKFINSRVKVVISDHRYFVGQMLAFDTHSNIVLKDCEEYRRLNRRKAGEL- 59
Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPPPQEGSASRSLTGS 368
+E KR +G ++LRGE ++ + I GPPPP S S S
Sbjct: 60 QEAKRNIGLMILRGETVLHIDIVGPPPPNGNRMSASTASS 99
>UniRef50_A3LXX4 Cluster: Predicted protein; n=3;
Saccharomycetaceae|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 142
Score = 78.2 bits (184), Expect = 5e-14
Identities = 44/97 (45%), Positives = 60/97 (61%), Gaps = 10/97 (10%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKS-----KN 233
+ I K KM I+YR+++ D+R FI + AFDKH+NL+L D EE R K K
Sbjct: 4 LPITKTTKMSDLIHYRLKISTIDNRFFIGSLLAFDKHLNLVLSDTEETRITKKSIVSMKK 63
Query: 234 SKTADRE-----EKRTLGFVLLRGENIVSLTIEGPPP 329
S +D + +KR+LG ++LRGE IVSL+IE PPP
Sbjct: 64 SAGSDGKHDPTFDKRSLGLIILRGEQIVSLSIESPPP 100
>UniRef50_Q59KX5 Cluster: Potential spliceosomal snRNA Sm core
binding protein B/B'; n=1; Candida albicans|Rep:
Potential spliceosomal snRNA Sm core binding protein
B/B' - Candida albicans (Yeast)
Length = 110
Score = 71.7 bits (168), Expect = 4e-12
Identities = 38/86 (44%), Positives = 54/86 (62%), Gaps = 7/86 (8%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSK----TADRE-- 254
M IN+R+++I D+RT++ T +FDKHMNL+L D EE R K S+ T + E
Sbjct: 1 MSDLINFRIKIITIDNRTYLGTLLSFDKHMNLVLSDTEESRITKKSYSQLKKHTPNVELV 60
Query: 255 -EKRTLGFVLLRGENIVSLTIEGPPP 329
+KR LG ++LRG+ +VS TIE P
Sbjct: 61 YDKRNLGLIILRGDQVVSFTIESNAP 86
>UniRef50_UPI0000499A4F Cluster: small nuclear ribonucleoprotein F;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein F - Entamoeba histolytica HM-1:IMSS
Length = 205
Score = 71.3 bits (167), Expect = 5e-12
Identities = 33/86 (38%), Positives = 58/86 (67%)
Frame = +3
Query: 81 KNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEK 260
K++K+ ++INY ++V + R F+ F AFDK+MN+IL + E R + +K ++ ++E +
Sbjct: 4 KSSKISKYINYTIKVTTIEGRNFVGKFLAFDKYMNMILSETIEKRTVINKKTR-EEKEIE 62
Query: 261 RTLGFVLLRGENIVSLTIEGPPPPQE 338
R+LG +LLRG+ I T+ PPP ++
Sbjct: 63 RSLGMMLLRGDCIQGYTVLSPPPKRK 88
>UniRef50_Q6CWY1 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome B of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 191
Score = 70.1 bits (164), Expect = 1e-11
Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 9/91 (9%)
Frame = +3
Query: 81 KNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRK--------IKSKNS 236
K K+ I+YR+RV D R +I AFD +MNL++GDC E R +KS +
Sbjct: 9 KETKLSDLIDYRIRVATHDGRVYIGQLMAFDAYMNLVMGDCVEERMPHKQIIEVLKSGGN 68
Query: 237 KTAD-REEKRTLGFVLLRGENIVSLTIEGPP 326
+++ + E+RT G ++LRGE+++S ++E PP
Sbjct: 69 LSSNVQVERRTFGLIILRGEHVLSTSVESPP 99
>UniRef50_Q4P7M4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 232
Score = 70.1 bits (164), Expect = 1e-11
Identities = 48/117 (41%), Positives = 62/117 (52%), Gaps = 31/117 (26%)
Frame = +3
Query: 81 KNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEF-----RKIK------S 227
K KM INYR+R+ L DSR + AFD HMNL+L D +E+ RK K S
Sbjct: 7 KGGKMMSLINYRLRITLNDSRQIVGQLLAFDAHMNLVLADSQEYRKVKSRKAKARAAAAS 66
Query: 228 KNSKT--------------------ADREEKRTLGFVLLRGENIVSLTIEGPPPPQE 338
K++K+ A E+KRTLG ++LRGENIVS+ IE PPP +
Sbjct: 67 KSAKSGVQDEDEDDDDAAAASGAPDAVLEQKRTLGLLILRGENIVSMAIEAPPPTDD 123
>UniRef50_P40018 Cluster: Small nuclear ribonucleoprotein-associated
protein B; n=4; Saccharomycetales|Rep: Small nuclear
ribonucleoprotein-associated protein B - Saccharomyces
cerevisiae (Baker's yeast)
Length = 196
Score = 68.5 bits (160), Expect = 4e-11
Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 12/99 (12%)
Frame = +3
Query: 66 KMTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTA 245
K+ + ++++ I+Y++RV+ QD R +I AFDKHMNL+L +C E R K++ K
Sbjct: 3 KIQVAHSSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLR 62
Query: 246 DRE------------EKRTLGFVLLRGENIVSLTIEGPP 326
R+ EKR LG +LRGE I+S +E P
Sbjct: 63 PRKDSKDGTTLNIKVEKRVLGLTILRGEQILSTVVEDKP 101
>UniRef50_Q4D159 Cluster: Small nuclear ribonucleoprotein protein,
putative; n=5; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein protein, putative - Trypanosoma cruzi
Length = 114
Score = 60.1 bits (139), Expect = 1e-08
Identities = 29/76 (38%), Positives = 47/76 (61%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
M +IN +R++L D R +D+HMN++LGD E R+ ++K K A +R+LG
Sbjct: 6 MLHNINRTLRIVLIDGRELTGKLLVYDRHMNVVLGDATESRE-ETKKMKEAGISPQRSLG 64
Query: 273 FVLLRGENIVSLTIEG 320
VLLRG +++S+ + G
Sbjct: 65 LVLLRGVHVISVNVLG 80
>UniRef50_A7T7F0 Cluster: Predicted protein; n=3; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 86
Score = 57.6 bits (133), Expect = 7e-08
Identities = 29/84 (34%), Positives = 48/84 (57%)
Frame = +3
Query: 90 KMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 269
+++ +N +RV + D RT I +F DK N+ILG C+EF + S D+E+ R L
Sbjct: 3 ELESWLNKLMRVKISDGRTLIGSFLCTDKDRNIILGSCQEFSLLLSLG---VDKEDPRIL 59
Query: 270 GFVLLRGENIVSLTIEGPPPPQEG 341
G ++ G +I S+ ++ PP+ G
Sbjct: 60 GLAMVPGRHIQSIEVDMHRPPKYG 83
>UniRef50_Q755T6 Cluster: AER432Cp; n=1; Eremothecium gossypii|Rep:
AER432Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 158
Score = 51.6 bits (118), Expect = 5e-06
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = +3
Query: 72 TIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFR 215
T+ + ++ I+Y++RV+ QD R ++ T AFD HMNL+L DC E R
Sbjct: 4 TVSHRSTLKDLIDYKLRVLSQDGRVYVGTLLAFDAHMNLVLADCVEER 51
>UniRef50_A5E144 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 152
Score = 51.6 bits (118), Expect = 5e-06
Identities = 22/56 (39%), Positives = 36/56 (64%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEK 260
M INYR+R++ D+RT++ + +FDKH+NL+L D EE R K + ++ +K
Sbjct: 1 MSDLINYRLRILTVDNRTYVGSLLSFDKHLNLVLSDTEESRITKKSWIEMKNKSQK 56
Score = 31.9 bits (69), Expect = 4.1
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3
Query: 258 KRTLGFVLLRGENIVSLTIEGPP 326
+R LG ++LRGE IVSL+IE P
Sbjct: 101 RRHLGLIILRGEQIVSLSIETGP 123
>UniRef50_A2BIG9 Cluster: LSM domain-containing protein 1; n=14;
Euteleostomi|Rep: LSM domain-containing protein 1 -
Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 109
Score = 48.4 bits (110), Expect = 4e-05
Identities = 25/76 (32%), Positives = 44/76 (57%)
Frame = +3
Query: 90 KMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 269
K++ +N +R+ + D RT + F D+ N+ILG +EF +KS +S + E R L
Sbjct: 27 KLENLLNKSMRIRMTDGRTLVGLFLCTDRDCNVILGSAQEF--LKSTDS--LSQGEPRVL 82
Query: 270 GFVLLRGENIVSLTIE 317
G ++ G ++VS+ +E
Sbjct: 83 GLAMIPGHHVVSIEVE 98
>UniRef50_Q9W087 Cluster: CG2021-PA; n=14; Eukaryota|Rep: CG2021-PA
- Drosophila melanogaster (Fruit fly)
Length = 95
Score = 47.2 bits (107), Expect = 1e-04
Identities = 24/69 (34%), Positives = 39/69 (56%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
++ +IN+ V +I D R FI T K FD+ +N+I+ +C E + T E+ LG
Sbjct: 4 LESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHE------RVFSTTSGIEQIVLG 57
Query: 273 FVLLRGENI 299
++RG+NI
Sbjct: 58 LHIIRGDNI 66
>UniRef50_UPI0000513250 Cluster: PREDICTED: similar to CG31950-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to
CG31950-PA - Apis mellifera
Length = 103
Score = 46.8 bits (106), Expect = 1e-04
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = +3
Query: 90 KMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 269
K++ +N +R+ + D R I F D+ N+ILG C EF + D E RTL
Sbjct: 35 KLRGWLNRNLRIKMTDGRVLIGAFLCTDRDANVILGSCSEF--------LSEDHTEARTL 86
Query: 270 GFVLLRGENIVSLTIE 317
G V++ G +IV++ ++
Sbjct: 87 GLVMIPGRHIVTIHLD 102
>UniRef50_Q4V620 Cluster: IP06106p; n=3; Sophophora|Rep: IP06106p -
Drosophila melanogaster (Fruit fly)
Length = 121
Score = 46.8 bits (106), Expect = 1e-04
Identities = 26/87 (29%), Positives = 48/87 (55%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
+T G+ K+Q+ + +R+++ D R + F D+ N++L C E+ +
Sbjct: 38 LTPGRR-KLQKWLGRVLRIVITDGRVLVGFFNCTDRDANIVLSMCAEY---------LVE 87
Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPP 329
+E R LG V++ G++IVSL+I+ P P
Sbjct: 88 GQEPRLLGNVMVPGQHIVSLSIDEPDP 114
>UniRef50_UPI0000D55DF4 Cluster: PREDICTED: similar to CG31950-PA;
n=2; Endopterygota|Rep: PREDICTED: similar to CG31950-PA
- Tribolium castaneum
Length = 134
Score = 46.4 bits (105), Expect = 2e-04
Identities = 24/75 (32%), Positives = 40/75 (53%)
Frame = +3
Query: 90 KMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 269
K++ +N +R+ + D R + F D+ N+ILG C E+ + T EE R L
Sbjct: 38 KLRSWLNKSLRIQMFDGRVLVGVFLCTDRDANVILGSCTEYLPAEDNGDGTI--EEPRML 95
Query: 270 GFVLLRGENIVSLTI 314
G V++ G++I S+ I
Sbjct: 96 GLVMVPGKHIQSVAI 110
>UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Methanobacterium thermoautotrophicum
Length = 81
Score = 45.2 bits (102), Expect = 4e-04
Identities = 28/69 (40%), Positives = 37/69 (53%)
Frame = +3
Query: 105 INYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 284
+N V + L+ R F K+FD HMNL+L D EE D E R LG VL+
Sbjct: 22 LNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELE----------DGEVTRRLGTVLI 71
Query: 285 RGENIVSLT 311
RG+NIV ++
Sbjct: 72 RGDNIVYIS 80
>UniRef50_Q9BRA0 Cluster: LSM domain-containing protein 1; n=12;
Theria|Rep: LSM domain-containing protein 1 - Homo
sapiens (Human)
Length = 125
Score = 45.2 bits (102), Expect = 4e-04
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Frame = +3
Query: 90 KMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 269
+++ +N +R+ + D RT + F D+ N+ILG +EF +K +S +A E R L
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVL 99
Query: 270 GFVLLRGENIVSLTIE-----GPP 326
G ++ G +IVS+ ++ GPP
Sbjct: 100 GLAMVPGHHIVSIEVQRESLTGPP 123
>UniRef50_P47017 Cluster: Sm-like protein LSm1; n=11;
Saccharomycetales|Rep: Sm-like protein LSm1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 172
Score = 44.8 bits (101), Expect = 5e-04
Identities = 27/68 (39%), Positives = 41/68 (60%)
Frame = +3
Query: 105 INYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 284
++ ++ V+L+D R + FD++ NLIL DC E R S+ +K A EE R G ++
Sbjct: 50 VDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVE-RIYFSEENKYA--EEDR--GIFMI 104
Query: 285 RGENIVSL 308
RGEN+V L
Sbjct: 105 RGENVVML 112
>UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core,
putative; n=2; Culicidae|Rep: Small nuclear
ribonucleoprotein, core, putative - Aedes aegypti
(Yellowfever mosquito)
Length = 162
Score = 43.2 bits (97), Expect = 0.002
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +3
Query: 48 LPNHSDKMTIGKN-NKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIK 224
L N + + I + + ++ ++N V +I D R F+ T K FD+ +N+IL + E ++
Sbjct: 55 LSNRNQRYDIHETMSGLESYVNTTVSIITADGRNFVGTLKGFDQTINIILDESHE--RVY 112
Query: 225 SKNSKTADREEKRTLGFVLLRGENI 299
S N+ E+ LG ++RG+N+
Sbjct: 113 SMNAGI----EQVVLGLHIIRGDNV 133
>UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4;
Thermoplasmatales|Rep: Small nuclear ribonucleoprotein -
Thermoplasma volcanium
Length = 71
Score = 42.7 bits (96), Expect = 0.002
Identities = 23/72 (31%), Positives = 42/72 (58%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
+++ +N RV ++L+D+R T +D +MN++L D +E NS+ R+ LG
Sbjct: 8 LEESVNKRVSLLLKDNRVLEGTLTGYDDYMNMVLDDVDE-------NSENVSRK----LG 56
Query: 273 FVLLRGENIVSL 308
V++RG N+V +
Sbjct: 57 TVVIRGSNVVRI 68
>UniRef50_Q701X8 Cluster: Putative uncharacterized protein; n=1;
uncultured crenarchaeote|Rep: Putative uncharacterized
protein - uncultured crenarchaeote
Length = 89
Score = 41.9 bits (94), Expect = 0.004
Identities = 20/78 (25%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR----EEK 260
+Q+ + V V L+ R+ K FDK MN+++ + E + +S N+ +++ E++
Sbjct: 11 LQESVGKIVLVKLKGRRSVKGKIKGFDKQMNIVITEATEVIEQQSNNNDNSEKGKGQEQE 70
Query: 261 RTLGFVLLRGENIVSLTI 314
+G L+RG+N++++ +
Sbjct: 71 TQVGDALIRGDNVITIAV 88
>UniRef50_Q3LW01 Cluster: MRNA splicing factor; n=1; Bigelowiella
natans|Rep: MRNA splicing factor - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 82
Score = 41.5 bits (93), Expect = 0.005
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFK------AFDKHMNLILGDCEEFRKIKSKNSKTADRE 254
++++IN R+ ++ ++ +K A+DK MNL+L D EE+ N K +E
Sbjct: 8 LKKYINKRINIVTKNYDRINGRYKKFYRLLAYDKFMNLVLSDVEEY-----INDKKDSQE 62
Query: 255 EKRTLGFVLLRGENIVSL 308
+R LG ++LRG I+ L
Sbjct: 63 IRRVLGLMVLRGSEIIYL 80
>UniRef50_Q5K8A9 Cluster: RNA cap binding protein, putative; n=1;
Filobasidiella neoformans|Rep: RNA cap binding protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 135
Score = 41.1 bits (92), Expect = 0.007
Identities = 24/68 (35%), Positives = 41/68 (60%)
Frame = +3
Query: 105 INYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 284
++ +V VIL+D R I F+++D+ N +L C E K + AD++ +G +L+
Sbjct: 17 VDKKVLVILRDGRKLIGLFRSYDQFANFLLESCVERLHYK---LEYADKD----IGVLLV 69
Query: 285 RGENIVSL 308
RGEN+V+L
Sbjct: 70 RGENVVAL 77
>UniRef50_Q4MZU2 Cluster: U6 snRNA-associated Sm-like protein LSm8,
putative; n=2; Piroplasmida|Rep: U6 snRNA-associated
Sm-like protein LSm8, putative - Theileria parva
Length = 94
Score = 40.7 bits (91), Expect = 0.009
Identities = 26/70 (37%), Positives = 38/70 (54%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
++Q I V VI D R F+ K FD+ NL+L +C E ++ ++ + E LG
Sbjct: 5 LEQFIECSVFVISVDGRVFVGVLKGFDQLTNLVLYNCLE--RVYHPDAPVEELE----LG 58
Query: 273 FVLLRGENIV 302
LLRG+NIV
Sbjct: 59 IYLLRGDNIV 68
>UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=2; Saccharomyces cerevisiae|Rep: U6 snRNA-associated
Sm-like protein LSm3 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 89
Score = 40.7 bits (91), Expect = 0.009
Identities = 21/73 (28%), Positives = 41/73 (56%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
++ +++ RV + L+ +RT + T +AFD H N++L D E I N++ E+R
Sbjct: 8 LKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE--TIYQLNNEELSESERR-CE 64
Query: 273 FVLLRGENIVSLT 311
V +RG+ + ++
Sbjct: 65 MVFIRGDTVTLIS 77
>UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm8;
n=23; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm8 - Homo sapiens (Human)
Length = 96
Score = 40.3 bits (90), Expect = 0.012
Identities = 24/69 (34%), Positives = 36/69 (52%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
++ +IN V VI D R + T K FD+ +NLIL + E R S E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLG 58
Query: 273 FVLLRGENI 299
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>UniRef50_Q014C2 Cluster: Small Nuclear ribonucleoprotein splicing
factor; n=1; Ostreococcus tauri|Rep: Small Nuclear
ribonucleoprotein splicing factor - Ostreococcus tauri
Length = 110
Score = 39.9 bits (89), Expect = 0.015
Identities = 22/65 (33%), Positives = 36/65 (55%)
Frame = +3
Query: 105 INYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 284
++ RV V+ D R + T + FD+ N+IL DC E ++ S S E+ LG ++
Sbjct: 12 VHARVHVLTNDGRHVVGTLRGFDQVTNVILEDCAE--RVYSSESGV----EEAPLGVYMI 65
Query: 285 RGENI 299
RG+N+
Sbjct: 66 RGDNV 70
>UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm5;
n=5; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm5 - Saccharomyces cerevisiae (Baker's yeast)
Length = 93
Score = 39.9 bits (89), Expect = 0.015
Identities = 25/78 (32%), Positives = 39/78 (50%)
Frame = +3
Query: 105 INYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 284
IN +V ++LQ +R F T FD +N+IL D E+ + ++ + + + G +LL
Sbjct: 16 INQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEW--LIDPEDESRNEKVMQHHGRMLL 73
Query: 285 RGENIVSLTIEGPPPPQE 338
G NI L G P E
Sbjct: 74 SGNNIAILVPGGKKTPTE 91
>UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 78
Score = 39.5 bits (88), Expect = 0.020
Identities = 27/81 (33%), Positives = 43/81 (53%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
+ + IN V + L+ ++T FD+HMNL+L EE A+ E K LG
Sbjct: 10 LDESINQIVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEI---------PAEGEAK-GLG 59
Query: 273 FVLLRGENIVSLTIEGPPPPQ 335
+++RG+N+V ++ PPP Q
Sbjct: 60 SIVVRGDNVVMIS---PPPAQ 77
>UniRef50_Q4Z0C4 Cluster: U6 snRNA-associated Sm-like protein,
putative; n=4; Plasmodium|Rep: U6 snRNA-associated
Sm-like protein, putative - Plasmodium berghei
Length = 108
Score = 39.1 bits (87), Expect = 0.027
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = +3
Query: 87 NKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRT 266
N +++ +N ++RV R + D NL+L EEF I+ N E+ R
Sbjct: 19 NDIKKFMNQKIRVKFDGGREVVGNLIGHDAIFNLVLDKTEEF--IRDPNDSYVITEKSRN 76
Query: 267 LGFVLLRGENIVSLT 311
+G ++ RG ++ +T
Sbjct: 77 IGLIVARGTSVALIT 91
>UniRef50_Q4MYV9 Cluster: U6 snRNA-associated protein, putative;
n=2; Theileria|Rep: U6 snRNA-associated protein,
putative - Theileria parva
Length = 104
Score = 39.1 bits (87), Expect = 0.027
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
+ +H+N V V R + D NL+L D E+ K S +SK EKR LG
Sbjct: 17 LNKHLNKEVYVKFSGGREVKGVLRGHDAMSNLVLDDTVEYLKDSSDSSKLTG--EKRNLG 74
Query: 273 FVLLRGENI-VSLTIEG 320
++ RG ++ V +EG
Sbjct: 75 LLVARGTSVTVVYPVEG 91
>UniRef50_Q74ZR8 Cluster: AGR130Wp; n=2; Saccharomycetales|Rep:
AGR130Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 80
Score = 39.1 bits (87), Expect = 0.027
Identities = 26/75 (34%), Positives = 35/75 (46%)
Frame = +3
Query: 105 INYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 284
IN + V+L +R F T FD +N+++ D E+ DR KR G +LL
Sbjct: 13 INQPIWVLLTSNREFTGTLVGFDDFVNVVIEDVVEY--------DAPDRAVKRHPGRMLL 64
Query: 285 RGENIVSLTIEGPPP 329
G NI L G PP
Sbjct: 65 SGNNITVLVPGGKPP 79
>UniRef50_Q8IGW7 Cluster: RE11655p; n=12; Eukaryota|Rep: RE11655p -
Drosophila melanogaster (Fruit fly)
Length = 103
Score = 38.7 bits (86), Expect = 0.035
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +3
Query: 105 INYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 275
++ +V V +++ R AFD+H+N++LGD EE +I + + + KRT+
Sbjct: 26 LDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTAKRTIPM 85
Query: 276 VLLRGENIV 302
+ +RG+ ++
Sbjct: 86 LFVRGDGVI 94
>UniRef50_A4VDT4 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 107
Score = 38.7 bits (86), Expect = 0.035
Identities = 23/74 (31%), Positives = 36/74 (48%)
Frame = +3
Query: 87 NKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRT 266
N +++ + ++++I D + I K D+ +N IL DC E N+KT
Sbjct: 15 NPLEKLLFKKIQIITTDGKVLIGILKGLDQALNSILSDCVERVFSSENNTKTIKH----- 69
Query: 267 LGFVLLRGENIVSL 308
G LLRG+NI L
Sbjct: 70 -GLYLLRGDNIAVL 82
>UniRef50_Q8SR04 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN D2; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN D2 - Encephalitozoon cuniculi
Length = 135
Score = 38.7 bits (86), Expect = 0.035
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +3
Query: 117 VRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR---EEKRTLGFVLLR 287
V V L+ +R + A+D+H NL++ D +E + KN R E R LG V +R
Sbjct: 35 VLVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTTRGKNKGRKKRQGCEFSRKLGKVFIR 94
Query: 288 GENIV 302
G+ ++
Sbjct: 95 GDTVI 99
>UniRef50_O74483 Cluster: U6 snRNA-associated Sm-like protein LSm8;
n=1; Schizosaccharomyces pombe|Rep: U6 snRNA-associated
Sm-like protein LSm8 - Schizosaccharomyces pombe
(Fission yeast)
Length = 94
Score = 38.7 bits (86), Expect = 0.035
Identities = 26/62 (41%), Positives = 32/62 (51%)
Frame = +3
Query: 114 RVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGE 293
RV+VI D R + + K FD NLIL D F +I S + E LG LLRGE
Sbjct: 10 RVQVITNDGRVVLGSLKGFDHTTNLILSD--SFERIISMDQDM----ETIPLGVYLLRGE 63
Query: 294 NI 299
N+
Sbjct: 64 NV 65
>UniRef50_A5K5F8 Cluster: U6 snRNA-associated Sm-like protein LSm8,
putative; n=2; Plasmodium|Rep: U6 snRNA-associated
Sm-like protein LSm8, putative - Plasmodium vivax
Length = 95
Score = 38.3 bits (85), Expect = 0.047
Identities = 23/69 (33%), Positives = 37/69 (53%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
++ ++ + VI DSR F K FD+ N+ILG+C E R K + EK +LG
Sbjct: 6 IESYLENEILVITNDSRIFTGKLKGFDQTTNIILGNCYE-RIYK-------ESLEKISLG 57
Query: 273 FVLLRGENI 299
++RG+ +
Sbjct: 58 LYIIRGDTV 66
>UniRef50_A6RWH0 Cluster: Predicted protein; n=10;
Pezizomycotina|Rep: Predicted protein - Botryotinia
fuckeliana B05.10
Length = 98
Score = 37.9 bits (84), Expect = 0.062
Identities = 22/70 (31%), Positives = 36/70 (51%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
+ ++N +V ++ DSRT + T + D+ NL+L E R I+ A E G
Sbjct: 3 LSSYVNKKVLILTADSRTLVGTLLSCDQQTNLVLSQTIE-RIIRPPEDIEASSEVPH--G 59
Query: 273 FVLLRGENIV 302
L+RG+N+V
Sbjct: 60 LYLIRGDNVV 69
>UniRef50_Q9AVX5 Cluster: Small nuclear ribonucleoprotein SM D2;
n=1; Guillardia theta|Rep: Small nuclear
ribonucleoprotein SM D2 - Guillardia theta (Cryptomonas
phi)
Length = 82
Score = 37.5 bits (83), Expect = 0.082
Identities = 21/66 (31%), Positives = 37/66 (56%)
Frame = +3
Query: 117 VRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGEN 296
V +IL++++ I +DKH+NL+L + E K +N + + + + V LRG+N
Sbjct: 17 VMIILRNNKRMIGKIINYDKHLNLLLENVNEI-KFVGENFSELIKIKSKFIPKVFLRGDN 75
Query: 297 IVSLTI 314
IV + I
Sbjct: 76 IVLILI 81
>UniRef50_P53905 Cluster: U6 snRNA-associated Sm-like protein LSm7;
n=6; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm7 - Saccharomyces cerevisiae (Baker's yeast)
Length = 115
Score = 37.5 bits (83), Expect = 0.082
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +3
Query: 114 RVRVILQDSRTFIVTFKAFDKHMNLILGDCEEF-RKIKSKNSKTADREEKRTLGFVLLRG 290
++RV L + I K +D+ MNL+L D E+ +N+ + R LG ++RG
Sbjct: 37 KIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARKLGLTVIRG 96
Query: 291 ENIVSLT 311
+VSL+
Sbjct: 97 TILVSLS 103
>UniRef50_A7AWS6 Cluster: Small nuclear ribonucleoprotein, putative;
n=1; Babesia bovis|Rep: Small nuclear ribonucleoprotein,
putative - Babesia bovis
Length = 162
Score = 37.1 bits (82), Expect = 0.11
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 108 NYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEE-FRKIKSKNSKTADREEKRTLGFVLL 284
N +V + + +R + KAFD+H N+IL D E + ++ K + R + + L
Sbjct: 90 NSQVLINCRSNRKLLGRVKAFDRHFNMILTDVREMWTEVSGGGGKKKYMNKDRYISRLFL 149
Query: 285 RGENIV 302
RG+++V
Sbjct: 150 RGDSVV 155
>UniRef50_A2E014 Cluster: Sm protein; n=2; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 84
Score = 37.1 bits (82), Expect = 0.11
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +3
Query: 114 RVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGE 293
RV+V +Q+ + A+D+H N+ILGD E KN K + + + + +RG+
Sbjct: 18 RVKVKVQEGQELEGVLHAYDEHYNIILGDVLESIMGLDKNGKFIPVRQNQ-IDMLFVRGD 76
Query: 294 NIVSL 308
IVS+
Sbjct: 77 RIVSI 81
>UniRef50_A0D2M7 Cluster: Chromosome undetermined scaffold_35, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_35,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 83
Score = 37.1 bits (82), Expect = 0.11
Identities = 27/77 (35%), Positives = 38/77 (49%)
Frame = +3
Query: 90 KMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 269
K+Q HIN V + Q R T +FD +NL+L +E R++ S +R L
Sbjct: 11 KLQSHINKEVVIQFQGGRQVKGTLLSFDNQLNLVL---DEVRELPS----------QRIL 57
Query: 270 GFVLLRGENIVSLTIEG 320
G V+ RG I S I+G
Sbjct: 58 GLVICRGALINSFAIDG 74
>UniRef50_A2FU85 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 111
Score = 36.7 bits (81), Expect = 0.14
Identities = 23/75 (30%), Positives = 36/75 (48%)
Frame = +3
Query: 123 VILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIV 302
+ L+ +R KA D+H N+IL E +K + A +R + + LRG+N++
Sbjct: 39 IALRSNRKLYGYIKAVDRHWNMILEHVIEITPTPAKPGQPAAAPIQRRINRLFLRGDNVI 98
Query: 303 SLTIEGPPPPQEGSA 347
I P P E SA
Sbjct: 99 --CIYPNPKPIENSA 111
>UniRef50_A1CDT1 Cluster: Small nuclear ribonucleoprotein SmE,
putative; n=12; Pezizomycotina|Rep: Small nuclear
ribonucleoprotein SmE, putative - Aspergillus clavatus
Length = 95
Score = 36.7 bits (81), Expect = 0.14
Identities = 19/46 (41%), Positives = 30/46 (65%)
Frame = +3
Query: 162 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 299
+ FD+ MNL++ D E R +KT D E++R LG +LL+G+N+
Sbjct: 48 RGFDEFMNLVVDDAVEVRMA----TKT-DEEKRRPLGQILLKGDNV 88
>UniRef50_Q8TQX4 Cluster: Sm protein; n=8; Archaea|Rep: Sm protein -
Methanosarcina acetivorans
Length = 74
Score = 36.7 bits (81), Expect = 0.14
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +3
Query: 84 NNKMQQHINYRVRVILQDSRTFIV-TFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEK 260
N K+Q+ + R+RV ++ + T K+ D +MNL L D E + E+
Sbjct: 4 NKKVQKIVGSRIRVEMKGDLNLLEGTLKSVDDYMNLHLVDTMEIVR----------GEKV 53
Query: 261 RTLGFVLLRGENIVSLT 311
R+LG V+LRG NI+ +T
Sbjct: 54 RSLGSVVLRGNNIILIT 70
>UniRef50_P62310 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=39; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm3 - Homo sapiens (Human)
Length = 102
Score = 36.7 bits (81), Expect = 0.14
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +3
Query: 105 INYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 275
++ R+ V +++ R A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 276 VLLRGENIV 302
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1;
Aeropyrum pernix|Rep: Putative snRNP Sm-like protein -
Aeropyrum pernix
Length = 77
Score = 36.3 bits (80), Expect = 0.19
Identities = 24/84 (28%), Positives = 40/84 (47%)
Frame = +3
Query: 60 SDKMTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSK 239
S +T+ M +++ V V L+ K +D+H+N+ILGD EE +
Sbjct: 2 SGPITLPTLRMMLDYVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEEIGETSI---- 57
Query: 240 TADREEKRTLGFVLLRGENIVSLT 311
R LG L+RG+++V +T
Sbjct: 58 -------RRLGLTLVRGDSVVVIT 74
>UniRef50_Q6NNL2 Cluster: At4g18372; n=4; Magnoliophyta|Rep:
At4g18372 - Arabidopsis thaliana (Mouse-ear cress)
Length = 78
Score = 35.5 bits (78), Expect = 0.33
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 129 LQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 284
++D R F+ F DK N+IL D E+R I+ + E+R LG +L+
Sbjct: 5 IKDGRFFLGNFHCIDKQGNIILQDTVEYRSIRRSSPSPT---EQRCLGMILI 53
>UniRef50_Q3LVZ4 Cluster: MRNA splicing factor; n=1; Bigelowiella
natans|Rep: MRNA splicing factor - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 101
Score = 35.5 bits (78), Expect = 0.33
Identities = 17/73 (23%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = +3
Query: 105 INYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADRE---EKRTLGF 275
+N ++ + D+ F + FDKH NL+L D E K ++ ++++ ++ +++ +
Sbjct: 27 LNSKIIISSNDNHKFYGFIRGFDKHCNLMLEDVTEIWKEETTDARSLKKKVVIKEKFIPK 86
Query: 276 VLLRGENIVSLTI 314
+ RG+ ++ +TI
Sbjct: 87 LFFRGDAVILITI 99
>UniRef50_A7P4Z8 Cluster: Chromosome chr4 scaffold_6, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr4 scaffold_6, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 145
Score = 35.5 bits (78), Expect = 0.33
Identities = 25/78 (32%), Positives = 40/78 (51%)
Frame = +3
Query: 51 PNHSDKMTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSK 230
PN S+ +T K++ + R+ V + D R F+ +F DK N+IL D E+R S
Sbjct: 51 PNGSNPVT-----KVRMLLFRRMLVGVSDGRFFLGSFHCMDKQGNIILQDTVEYR---ST 102
Query: 231 NSKTADREEKRTLGFVLL 284
+ E+R LG +L+
Sbjct: 103 RRSSPSPMEQRCLGLILI 120
>UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 111
Score = 35.5 bits (78), Expect = 0.33
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFK--AFDKHMNLILGDCEEFRKIKSKNSKTADREEKRT 266
M Q I R+++ L + + + + FD++MNL+L D EE N K ++ +++
Sbjct: 10 MTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEI------NVK---KDTRKS 60
Query: 267 LGFVLLRGENI 299
LG +LL+G+NI
Sbjct: 61 LGRILLKGDNI 71
>UniRef50_Q8IB34 Cluster: Ribonucleoprotein, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribonucleoprotein,
putative - Plasmodium falciparum (isolate 3D7)
Length = 74
Score = 35.5 bits (78), Expect = 0.33
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 141 RTFIVTFKAFDKHMNLILGDCEEFRKIKSK-NSKTADREEKRTLGFVLLRGENIV 302
R I A+D H+N+IL + E K K N + ++ +R L V +RG++I+
Sbjct: 13 RELIGKLDAYDNHLNMILSNVRETYKYSVKENDEETVKKMERNLDMVFVRGDSII 67
>UniRef50_A3FQL7 Cluster: Small nuclear ribonucleoprotein; n=2;
Cryptosporidium|Rep: Small nuclear ribonucleoprotein -
Cryptosporidium parvum Iowa II
Length = 106
Score = 35.5 bits (78), Expect = 0.33
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +3
Query: 108 NYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADRE---EKRTLGFV 278
N ++ V +++R + KAFD+H NL+L D E K+ K + + R + +
Sbjct: 32 NTQILVNCRNNRKILGRVKAFDRHCNLLLTDAREIWTESMKSGKKGSAKYINKDRFISKL 91
Query: 279 LLRGENIVSLTIEGP 323
+RG++++ L ++ P
Sbjct: 92 FVRGDSVI-LILKSP 105
>UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep:
Sm-like protein - Sulfolobus acidocaldarius
Length = 87
Score = 35.5 bits (78), Expect = 0.33
Identities = 24/71 (33%), Positives = 39/71 (54%)
Frame = +3
Query: 105 INYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 284
+N V V L++ ++ + D MNL+L DC E+R+ T+D K G VL+
Sbjct: 16 LNKIVLVKLKNGEEYVGRLEQSDGTMNLVLKDCTEYRE------GTSDPVAK--YGRVLI 67
Query: 285 RGENIVSLTIE 317
RG NI+ ++I+
Sbjct: 68 RGSNILFISID 78
>UniRef50_A7DRH4 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 80
Score = 35.5 bits (78), Expect = 0.33
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +3
Query: 129 LQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSL 308
L++++T T K FD HMNL L +N++ E+ +G VLLRG+NI+++
Sbjct: 24 LRNNKTVQGTLKDFDIHMNLTL-----------ENAEDVSEEKPNPIGKVLLRGDNILAI 72
Query: 309 TI 314
++
Sbjct: 73 SL 74
>UniRef50_A2X0E3 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 141
Score = 35.1 bits (77), Expect = 0.44
Identities = 23/65 (35%), Positives = 37/65 (56%)
Frame = +3
Query: 126 ILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVS 305
I+ S T V K FD++MNL+L + EE IK ++ +++LG +LL+G+NI
Sbjct: 85 IIVVSVTLHVHAKGFDEYMNLVLDEAEEI-NIK--------KDTRKSLGRILLKGDNITL 135
Query: 306 LTIEG 320
+ G
Sbjct: 136 MMNTG 140
>UniRef50_Q54W83 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 129
Score = 35.1 bits (77), Expect = 0.44
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +3
Query: 105 INYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 284
++ ++ V+L+D R FI + FD+ N++L D E D + LG +
Sbjct: 9 VDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIE-------RIYVGDCYSDKNLGLFFI 61
Query: 285 RGENIVSL 308
RG+N+V L
Sbjct: 62 RGDNVVIL 69
>UniRef50_Q4UC24 Cluster: U6 snRNA-associated Sm-like potein,
putative; n=1; Theileria annulata|Rep: U6
snRNA-associated Sm-like potein, putative - Theileria
annulata
Length = 113
Score = 35.1 bits (77), Expect = 0.44
Identities = 23/66 (34%), Positives = 35/66 (53%)
Frame = +3
Query: 117 VRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGEN 296
V VI D R F+ K FD+ NL+L +C E ++ ++ + E LG LLRG+N
Sbjct: 20 VFVISVDGRVFVGVLKGFDQLTNLVLYNCLE--RVYHPDAPVEELE----LGIYLLRGDN 73
Query: 297 IVSLTI 314
+ + I
Sbjct: 74 MYRIYI 79
>UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1;
Filobasidiella neoformans|Rep: U6 snRNA binding protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 131
Score = 35.1 bits (77), Expect = 0.44
Identities = 27/92 (29%), Positives = 43/92 (46%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
+ Q ++ +RV R K +D+ MNL++ D E + D R+LG
Sbjct: 29 LAQFVDKSIRVKFMGGREATGILKGYDQLMNLVMDDVVE---------EYEDGRPTRSLG 79
Query: 273 FVLLRGENIVSLTIEGPPPPQEGSASRSLTGS 368
V+LRG NIV ++ P +GS+ +S S
Sbjct: 80 LVVLRGPNIVLVS------PTDGSSGKSFLKS 105
>UniRef50_Q9UK45 Cluster: U6 snRNA-associated Sm-like protein LSm7;
n=26; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm7 - Homo sapiens (Human)
Length = 103
Score = 35.1 bits (77), Expect = 0.44
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
+ ++I+ +RV Q R K FD +NL+L E+ + K E+ R LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT--EDTRQLG 72
Query: 273 FVLLRGENIV 302
V+ RG ++V
Sbjct: 73 LVVCRGTSVV 82
>UniRef50_A4S1J9 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 100
Score = 34.7 bits (76), Expect = 0.58
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
+ + I+ VRV L R T K +D+ +NL+L + E + K +D E R LG
Sbjct: 10 LARFIDRGVRVKLSGGREVTGTLKGYDQLLNLVLDEAIEHLRDAEDALKISD--ETRALG 67
Query: 273 FVLLRGENIV 302
++ RG +++
Sbjct: 68 LLVCRGTSVM 77
>UniRef50_Q54HH8 Cluster: Putative small nuclear
ribonucleoparticle-associated protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative small nuclear
ribonucleoparticle-associated protein - Dictyostelium
discoideum AX4
Length = 257
Score = 34.7 bits (76), Expect = 0.58
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Frame = +3
Query: 165 AFDKHMNLILGDCEEFRKIKSKNSKTADREE------KRTLGFVLLRGENIVSLTI 314
AFDKHMN+IL D EE + T ++ + KR G + ++G+ +VS+ +
Sbjct: 200 AFDKHMNIILRDVEEEYDLLKSLPSTRNQNQPIQPKIKRYYGQLFIKGDTVVSVIL 255
>UniRef50_P62304 Cluster: Small nuclear ribonucleoprotein E; n=51;
Eukaryota|Rep: Small nuclear ribonucleoprotein E - Homo
sapiens (Human)
Length = 92
Score = 34.7 bits (76), Expect = 0.58
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +3
Query: 168 FDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSL 308
FD++MNL+L D EE +SKT R++ LG ++L+G+NI L
Sbjct: 50 FDEYMNLVLDDAEEI------HSKTKSRKQ---LGRIMLKGDNITLL 87
>UniRef50_Q5CLJ8 Cluster: U6 snRNA-associated sm-like protein; n=2;
Cryptosporidium|Rep: U6 snRNA-associated sm-like protein
- Cryptosporidium hominis
Length = 98
Score = 34.3 bits (75), Expect = 0.76
Identities = 20/72 (27%), Positives = 42/72 (58%)
Frame = +3
Query: 84 NNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKR 263
++ ++Q IN V V+ D++ ++ FD+ N++L +C E KI +K+ ++ E
Sbjct: 3 SSTLEQFINKTVSVLTVDNKVYVGNLVGFDQLTNIVLQNCSE--KIYNKD---LNKVETV 57
Query: 264 TLGFVLLRGENI 299
++ ++LRG+ I
Sbjct: 58 SMESLVLRGDCI 69
>UniRef50_Q4Q3L7 Cluster: Small nuclear ribonucleoprotein SmD2; n=7;
Trypanosomatidae|Rep: Small nuclear ribonucleoprotein
SmD2 - Leishmania major
Length = 103
Score = 34.3 bits (75), Expect = 0.76
Identities = 20/63 (31%), Positives = 37/63 (58%)
Frame = +3
Query: 114 RVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGE 293
RV + ++S+ + AFDKH NL+L +E +S S+ +++RT+ + LRGE
Sbjct: 41 RVFIQCRNSKALLAHVIAFDKHFNLVLKGVQEI--TESHGSE----QKQRTIENLFLRGE 94
Query: 294 NIV 302
+++
Sbjct: 95 SVI 97
>UniRef50_Q20229 Cluster: Putative uncharacterized protein lsm-1;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein lsm-1 - Caenorhabditis elegans
Length = 125
Score = 34.3 bits (75), Expect = 0.76
Identities = 20/67 (29%), Positives = 36/67 (53%)
Frame = +3
Query: 99 QHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFV 278
+ ++ ++ V+L+D R I ++ D+ NLIL D E ++ +T GF+
Sbjct: 16 EQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQ-------GFM 68
Query: 279 LLRGENI 299
L+RGEN+
Sbjct: 69 LIRGENV 75
>UniRef50_Q5KN63 Cluster: Sm-like protein, putative; n=1;
Filobasidiella neoformans|Rep: Sm-like protein, putative
- Cryptococcus neoformans (Filobasidiella neoformans)
Length = 95
Score = 34.3 bits (75), Expect = 0.76
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +3
Query: 114 RVRVILQDSRTFIVTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGFVLL 284
RV + L+ R A+D HMN+++ EE + + R E+RT + +
Sbjct: 23 RVLIKLRGDRIVTGVLHAYDAHMNVVISQAEESIHVVDVTEEGQPLPPRIERRTAEMLFV 82
Query: 285 RGENIVSLT 311
RG+ ++ L+
Sbjct: 83 RGDGVILLS 91
>UniRef50_Q06217 Cluster: Small nuclear ribonucleoprotein Sm D2;
n=31; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
D2 - Saccharomyces cerevisiae (Baker's yeast)
Length = 110
Score = 34.3 bits (75), Expect = 0.76
Identities = 19/62 (30%), Positives = 35/62 (56%)
Frame = +3
Query: 117 VRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGEN 296
V + L+++ I KAFD+H N++L + +E K K +RE R + + LRG++
Sbjct: 44 VIISLRNNHKIIARVKAFDRHCNMVLENVKELWTEK-KGKNVINRE--RFISKLFLRGDS 100
Query: 297 IV 302
++
Sbjct: 101 VI 102
>UniRef50_Q00XA2 Cluster: Putative small nuclear ribonucleoprotein
E; n=1; Ostreococcus tauri|Rep: Putative small nuclear
ribonucleoprotein E - Ostreococcus tauri
Length = 101
Score = 33.9 bits (74), Expect = 1.0
Identities = 21/75 (28%), Positives = 40/75 (53%)
Frame = +3
Query: 84 NNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKR 263
N ++++ ++R+ L +R+ + FD+ +NL+L D S N T EK
Sbjct: 24 NRSTLRYMDKKLRLRLNGNRSVTGILRGFDQFLNLVLDD--------STNDTTT---EKT 72
Query: 264 TLGFVLLRGENIVSL 308
+G V++RG ++VS+
Sbjct: 73 PMGMVVVRGNSVVSM 87
>UniRef50_A5K5Q0 Cluster: U6 snRNA-associated Sm-like protein LSm3,
putative; n=2; Plasmodium|Rep: U6 snRNA-associated
Sm-like protein LSm3, putative - Plasmodium vivax
Length = 91
Score = 33.9 bits (74), Expect = 1.0
Identities = 14/47 (29%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +3
Query: 165 AFDKHMNLILGDCEE-FRKIKSKNSKTADREEKRTLGFVLLRGENIV 302
A+D H+N+IL + E +++ +N + + ++ +R L V +RG++I+
Sbjct: 38 AYDNHLNMILSNAHETYKQSVVENDEESVKKIERNLDMVFVRGDSII 84
>UniRef50_A3FQF0 Cluster: Putative uncharacterized protein; n=2;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium parvum Iowa II
Length = 67
Score = 33.9 bits (74), Expect = 1.0
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +3
Query: 156 TFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLT 311
T +FD++MN++L DCEE+ D +K TLG V +R N++ ++
Sbjct: 6 TLVSFDEYMNILLNDCEEW----------IDNTKKGTLGKVFIRCNNVLYIS 47
>UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog;
n=5; Thermoproteaceae|Rep: Small nuclear
ribonucleoprotein homolog - Pyrobaculum aerophilum
Length = 80
Score = 33.9 bits (74), Expect = 1.0
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEE 209
+Q I +V V L+DS ++FD+H+NL+L D EE
Sbjct: 16 LQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEE 54
>UniRef50_Q7ZUG0 Cluster: Small nuclear ribonucleoprotein E; n=18;
Eukaryota|Rep: Small nuclear ribonucleoprotein E - Danio
rerio (Zebrafish) (Brachydanio rerio)
Length = 92
Score = 33.9 bits (74), Expect = 1.0
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +3
Query: 168 FDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSL 308
FD++MNL+L D EE +K+KN ++ LG ++L+G+NI L
Sbjct: 50 FDEYMNLVLDDAEEVH-MKTKN--------RKPLGRIMLKGDNITLL 87
>UniRef50_Q01DG8 Cluster: Small nuclear ribonucleoprotein D2-like
protein; n=5; Eukaryota|Rep: Small nuclear
ribonucleoprotein D2-like protein - Ostreococcus tauri
Length = 103
Score = 33.5 bits (73), Expect = 1.3
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Frame = +3
Query: 108 NYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEF----RKIKSKNSKTADREEKRTLGF 275
N +V + +++R + KAFD+H N++L + +E K ++K + R +
Sbjct: 28 NTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEIWTEVPKTGKGSAKAKPVNKDRFVSK 87
Query: 276 VLLRGENIVSLTIEGP 323
+ LRG++++ L + P
Sbjct: 88 MFLRGDSVI-LVLRNP 102
>UniRef50_Q6BIX4 Cluster: Similar to CA2640|IPF2930 Candida albicans
IPF2930 Suppressor of PAB1; n=3; Saccharomycetaceae|Rep:
Similar to CA2640|IPF2930 Candida albicans IPF2930
Suppressor of PAB1 - Debaryomyces hansenii (Yeast)
(Torulaspora hansenii)
Length = 91
Score = 33.5 bits (73), Expect = 1.3
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +3
Query: 117 VRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGEN 296
++ L+++R F T + FD N+I+ +C E R I D ++ LG L+RG N
Sbjct: 4 LKEFLENARLFEGTLQGFDNSTNVIINNCIE-RLIYPDEQ---DDNQEIPLGLYLMRGGN 59
Query: 297 IVSL 308
IV +
Sbjct: 60 IVCI 63
>UniRef50_A3DP35 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Staphylothermus marinus F1|Rep: Like-Sm
ribonucleoprotein, core - Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1)
Length = 91
Score = 33.5 bits (73), Expect = 1.3
Identities = 22/74 (29%), Positives = 38/74 (51%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
++ +N V V ++D +I T D MN++L +C+E+ + K R G
Sbjct: 15 LKSAVNQIVLVKIKDGHEYIGTLNMVDHTMNVVLSNCQEY----GDDGKPIAR-----YG 65
Query: 273 FVLLRGENIVSLTI 314
VL+RG +IV ++I
Sbjct: 66 KVLIRGSHIVFISI 79
>UniRef50_Q0WMZ9 Cluster: Sm-like protein; n=19; Eukaryota|Rep:
Sm-like protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 88
Score = 33.1 bits (72), Expect = 1.8
Identities = 21/74 (28%), Positives = 34/74 (45%)
Frame = +3
Query: 105 INYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 284
I ++ VI++ + + K FD ++N++L D E+ TA+ L +LL
Sbjct: 18 IGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEI-------TAEGRRVTKLDQILL 70
Query: 285 RGENIVSLTIEGPP 326
G NI L G P
Sbjct: 71 NGNNIAILVPGGSP 84
>UniRef50_Q7R4T3 Cluster: GLP_440_43387_42998; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_440_43387_42998 - Giardia lamblia
ATCC 50803
Length = 129
Score = 32.7 bits (71), Expect = 2.3
Identities = 23/87 (26%), Positives = 40/87 (45%)
Frame = +3
Query: 90 KMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 269
K+ ++ + V + + T A D+HMN+++ C ++K E R+L
Sbjct: 6 KLVNYVGSPLTVHALNGYVYTGTLLAIDRHMNMVISSC--CCRVK---------ESARSL 54
Query: 270 GFVLLRGENIVSLTIEGPPPPQEGSAS 350
G V+LRGE + T + P + S S
Sbjct: 55 GLVVLRGEEVAFFTQDKDVIPVKPSTS 81
>UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_122_3813_3433 - Giardia lamblia ATCC
50803
Length = 126
Score = 32.7 bits (71), Expect = 2.3
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 114 RVRVILQDSRTFIVTFKAFDKHMNLILGDCEE 209
RV V+LQ++ + +FD+HMNLIL + EE
Sbjct: 64 RVSVLLQNNSSITGLLASFDEHMNLILINAEE 95
>UniRef50_A2DQD7 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 107
Score = 32.7 bits (71), Expect = 2.3
Identities = 26/81 (32%), Positives = 42/81 (51%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
+Q+ +N V V + +F +D+HMNL+L EE I N + RE KR +G
Sbjct: 8 LQRLLNGLVTVTTVEGLSFQGILMNYDEHMNLVLRQVEE---IPQDNQQ---REPKR-IG 60
Query: 273 FVLLRGENIVSLTIEGPPPPQ 335
+++RG N+ T+E P+
Sbjct: 61 LMVMRGCNV--STVEAVQLPE 79
>UniRef50_Q976F2 Cluster: 90aa long hypothetical small nuclear
ribonucleoprotein; n=2; Thermoprotei|Rep: 90aa long
hypothetical small nuclear ribonucleoprotein -
Sulfolobus tokodaii
Length = 90
Score = 32.7 bits (71), Expect = 2.3
Identities = 24/70 (34%), Positives = 37/70 (52%)
Frame = +3
Query: 108 NYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLR 287
N V V L+D ++ + D MNL+L DC E R+ TA+ K G VL+R
Sbjct: 22 NKIVLVKLKDGSEYVGRLEQSDGTMNLVLRDCIETRE------GTAEPVAK--YGRVLIR 73
Query: 288 GENIVSLTIE 317
G NI+ ++++
Sbjct: 74 GSNILFISVD 83
>UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein,
putative; n=3; Piroplasmida|Rep: (U6) snRNA-associated
Sm-like protein, putative - Theileria annulata
Length = 90
Score = 32.3 bits (70), Expect = 3.1
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = +3
Query: 114 RVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGE 293
++ +I+++ + T + FD +MN++L D ++ S +AD + L L+ G
Sbjct: 23 KIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDY-------SFSADGVKTTELNDALVNGN 75
Query: 294 NIVSLTIEGPP 326
N+ L G P
Sbjct: 76 NVAMLVPGGKP 86
>UniRef50_Q1DNR5 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 101
Score = 32.3 bits (70), Expect = 3.1
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFR---------KIKSKNSKTA 245
++ +N VR+ D+R F+ FK D N+IL + E+R I + S+
Sbjct: 10 LESLLNRTVRLHTSDTRLFVGLFKCTDNDRNIILSNTYEYRFPTPVALNEAIAQQGSENQ 69
Query: 246 D----REEKRTLGFVLLRGENIVSLTIEGP 323
+ R +G V++ G++I + ++ P
Sbjct: 70 EVVKANMTSRFIGLVVVPGQHITKIEVDDP 99
>UniRef50_Q0ULJ4 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 234
Score = 32.3 bits (70), Expect = 3.1
Identities = 13/43 (30%), Positives = 29/43 (67%)
Frame = +3
Query: 105 INYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKN 233
++ +V V+L+D + +I +++D+ NL+L +C E +I ++N
Sbjct: 101 VDKKVDVLLRDEKEYIGILRSYDQFANLVLTECHE--RIAARN 141
>UniRef50_O74499 Cluster: U6 snRNP-associated protein Lsm7; n=19;
Eukaryota|Rep: U6 snRNP-associated protein Lsm7 -
Schizosaccharomyces pombe (Fission yeast)
Length = 113
Score = 32.3 bits (70), Expect = 3.1
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
+ ++ + R++ R K FD+ MNL+L D EE + T R LG
Sbjct: 28 LSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTG---AIRKLG 84
Query: 273 FVLLRGENIV 302
V++RG +V
Sbjct: 85 LVVVRGTTLV 94
>UniRef50_A5E5I9 Cluster: Methionine aminopeptidase; n=2;
Saccharomycetaceae|Rep: Methionine aminopeptidase -
Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 473
Score = 32.3 bits (70), Expect = 3.1
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 45 YLPNHSDKMTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLI 191
Y PN DK+T+GK++ M+ I V + DS F +TF K+ +++
Sbjct: 225 YTPNTGDKLTLGKDDLMKVDIGVHVNGRICDS-AFTMTFNEDGKYDSIM 272
>UniRef50_Q9Y7M4 Cluster: Probable U6 snRNA-associated Sm-like
protein LSm3; n=8; Ascomycota|Rep: Probable U6
snRNA-associated Sm-like protein LSm3 -
Schizosaccharomyces pombe (Fission yeast)
Length = 93
Score = 32.3 bits (70), Expect = 3.1
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +3
Query: 117 VRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEK---RTLGFVLLR 287
V V L+ R A+D+H+N++LGD EE I D+ K + + +R
Sbjct: 22 VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVR 81
Query: 288 GENIV 302
G++++
Sbjct: 82 GDSVI 86
>UniRef50_UPI0001556653 Cluster: PREDICTED: similar to sec13-like
protein, partial; n=3; Mammalia|Rep: PREDICTED: similar
to sec13-like protein, partial - Ornithorhynchus
anatinus
Length = 324
Score = 31.9 bits (69), Expect = 4.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 84 NNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDC 203
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 57 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 96
>UniRef50_Q96EE3-2 Cluster: Isoform A of Q96EE3 ; n=31;
Coelomata|Rep: Isoform A of Q96EE3 - Homo sapiens
(Human)
Length = 360
Score = 31.9 bits (69), Expect = 4.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 84 NNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDC 203
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>UniRef50_Q47U61 Cluster: Bacterial sugar transferase domain
protein; n=1; Colwellia psychrerythraea 34H|Rep:
Bacterial sugar transferase domain protein - Colwellia
psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 467
Score = 31.9 bits (69), Expect = 4.1
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 144 TFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGEN 296
TF + F F K L+LG + I+ + + DR++ GFV++ G++
Sbjct: 133 TFKIDFFGFGKRNILVLGSGQRASIIERRMRRDVDRQDFTVHGFVIMEGDS 183
>UniRef50_A3FQK4 Cluster: Small nuclear ribonucleoprotein, putative;
n=1; Cryptosporidium parvum Iowa II|Rep: Small nuclear
ribonucleoprotein, putative - Cryptosporidium parvum
Iowa II
Length = 92
Score = 31.9 bits (69), Expect = 4.1
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +3
Query: 114 RVRVILQDSRTFIV--TFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLR 287
RV++ L D + ++ + FD++MN++L E K +T ++G +LLR
Sbjct: 29 RVQIWLYDHKNLVLEGVIQGFDEYMNIVLDQASEVYTKKEVRRET-------SVGQLLLR 81
Query: 288 GENI 299
GENI
Sbjct: 82 GENI 85
>UniRef50_A0D0Y9 Cluster: Chromosome undetermined scaffold_33, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_33,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 104
Score = 31.9 bits (69), Expect = 4.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 78 GKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEE 209
G + ++ R+++ L RT I T FD MNL+L C+E
Sbjct: 13 GYQADLNKYFGKRLKIKLNAKRTIIGTVIGFDIFMNLVLDHCKE 56
>UniRef50_Q4PB34 Cluster: Putative uncharacterized protein; n=3;
Dikarya|Rep: Putative uncharacterized protein - Ustilago
maydis (Smut fungus)
Length = 136
Score = 31.9 bits (69), Expect = 4.1
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Frame = +3
Query: 66 KMTIGKNNKMQQHINYRVRVIL--QDSRTFIVTFK--AFDKHMNLILGDCEEFRKIKSKN 233
K+++ N + +H+ + RV L D+ F + K FD+ MN+ L D EE K+
Sbjct: 6 KVSVQPINIIFRHLQQQTRVSLWLYDNVDFRIEGKIIGFDEFMNVTLADAEEV--WTKKD 63
Query: 234 SKTADREEKRTLGFVLLRGENIV 302
+K + LG +LL+G+NIV
Sbjct: 64 NKRVE------LGRILLKGDNIV 80
>UniRef50_Q96EE3 Cluster: Nucleoporin SEH1-like; n=19;
Eumetazoa|Rep: Nucleoporin SEH1-like - Homo sapiens
(Human)
Length = 421
Score = 31.9 bits (69), Expect = 4.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 84 NNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDC 203
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>UniRef50_Q12330 Cluster: Small nuclear ribonucleoprotein E; n=3;
Saccharomycetaceae|Rep: Small nuclear ribonucleoprotein
E - Saccharomyces cerevisiae (Baker's yeast)
Length = 94
Score = 31.9 bits (69), Expect = 4.1
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +3
Query: 168 FDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLT 311
FD+ MN+++ + E + S + K D E+ LG +LL+G+NI +T
Sbjct: 46 FDEFMNVVIDEAVEI-PVNSADGKE-DVEKGTPLGKILLKGDNITLIT 91
>UniRef50_UPI0000E8142D Cluster: PREDICTED: death inducer-obliterator
1; n=1; Gallus gallus|Rep: PREDICTED: death
inducer-obliterator 1 - Gallus gallus
Length = 2157
Score = 31.5 bits (68), Expect = 5.4
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 204 EEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTIEGPPPP 332
EE + TA +EK+T + L G++ VS T G PPP
Sbjct: 1106 EEAEPSQFLKGPTASFQEKKTPKYTLYSGDSAVSTTPPGSPPP 1148
>UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein
polypeptide G; n=1; Hyacinthus orientalis|Rep: Small
nuclear ribonucleoprotein polypeptide G - Hyacinthus
orientalis (Common hyacinth)
Length = 96
Score = 31.5 bits (68), Expect = 5.4
Identities = 17/71 (23%), Positives = 36/71 (50%)
Frame = +3
Query: 96 QQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGF 275
Q H ++++ L +R + T + FD+ MNL++ N+ + +K +G
Sbjct: 27 QVHGTSKLQIKLNANRVVVGTLRGFDQFMNLVI-----------DNTMEVNGNDKNDIGM 75
Query: 276 VLLRGENIVSL 308
V++RG ++V +
Sbjct: 76 VVIRGNSVVMI 86
>UniRef50_A7PDU1 Cluster: Chromosome chr11 scaffold_13, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr11 scaffold_13, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 242
Score = 31.5 bits (68), Expect = 5.4
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +3
Query: 84 NNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLIL-GDCEEFRKIKSKNSKTADREEK 260
+ + +++ ++ V+L+D R + ++FD+ N +L G CE R I D
Sbjct: 12 STSLASYLDKKLLVLLRDGRKLLGVLRSFDQFANAVLEGACE--RAI------VGDIYCD 63
Query: 261 RTLGFVLLRGENIVSL 308
LG ++RGEN+V L
Sbjct: 64 IPLGLYVIRGENVVLL 79
>UniRef50_A4S5K5 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 126
Score = 31.5 bits (68), Expect = 5.4
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = +3
Query: 99 QHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFV 278
++++ R+ V L+D I T ++FD+ N++L E R I K LG
Sbjct: 15 ENLDKRLLVALRDGSNIIGTLRSFDQFANIVLESAVE-RIIVGKMFSDIP------LGLY 67
Query: 279 LLRGENIV 302
++RGEN+V
Sbjct: 68 IVRGENVV 75
>UniRef50_Q6QA14 Cluster: Lsm8p; n=6; Trypanosomatidae|Rep: Lsm8p -
Trypanosoma brucei
Length = 129
Score = 31.5 bits (68), Expect = 5.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEE 209
+ Q++ RV V+ D R + A D+ MNL+L C E
Sbjct: 2 LSQYLRRRVSVVTVDGRYLVGVLHAADQLMNLVLTSCAE 40
>UniRef50_Q23CZ4 Cluster: Putative uncharacterized protein; n=2;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 3589
Score = 31.5 bits (68), Expect = 5.4
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Frame = +3
Query: 51 PNHSDKMTIGKNNKMQQHINYRV-RVILQDSRTFIVTFKAFDK---HMNLILGDCEEF-R 215
PN +D +G++N + +NYR+ I S +++ F +K +M + +EF +
Sbjct: 3098 PNENDFSIVGRDNDYLRFLNYRLSEQIGCKSTNYVMNFNVDEKQKINMQSVSSTMDEFNK 3157
Query: 216 KIKSKNSKTADREEKRTLGFVLL 284
K + N K+ E + + + L
Sbjct: 3158 KFQQINQKSVGNENLKIISHLYL 3180
>UniRef50_Q2HFG8 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 189
Score = 31.5 bits (68), Expect = 5.4
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFR 215
+++ IN +RV DSR F TF D NLIL E+R
Sbjct: 17 LERLINKNLRVTTTDSRMFWGTFVCTDHESNLILKHAYEYR 57
>UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)
homolog; n=1; Methanopyrus kandleri|Rep: Small nuclear
ribonucleoprotein (SnRNP) homolog - Methanopyrus
kandleri
Length = 73
Score = 31.5 bits (68), Expect = 5.4
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +3
Query: 117 VRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGEN 296
V V L+ +T +FD H+NL+L DC E D + + LG VL+RG++
Sbjct: 15 VIVELKTGKTLRGRLVSFDGHLNLVLDDCVEI-----------DEDSEVRLGRVLIRGDS 63
Query: 297 IVSLT 311
+ ++
Sbjct: 64 VTLIS 68
>UniRef50_A4FX23 Cluster: Like-Sm ribonucleoprotein, core; n=4;
Methanococcus|Rep: Like-Sm ribonucleoprotein, core -
Methanococcus maripaludis
Length = 72
Score = 31.5 bits (68), Expect = 5.4
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = +3
Query: 105 INYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 284
IN V V L+D + KA+D HMN+ L +N+K + EEK +++
Sbjct: 15 INTNVTVFLKDGKVVKGRLKAYDLHMNVAL-----------ENAKIENDEEKE-FPMLVV 62
Query: 285 RGENIVSLTI 314
RG+N++ +++
Sbjct: 63 RGDNVLYVSL 72
>UniRef50_UPI0000F2B720 Cluster: PREDICTED: similar to RNA
polymerase I transcription termination factor 1; n=2;
Theria|Rep: PREDICTED: similar to RNA polymerase I
transcription termination factor 1 - Monodelphis
domestica
Length = 1389
Score = 31.1 bits (67), Expect = 7.1
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +3
Query: 183 NLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTIE 317
N IL D F+K K KNS D +E+ + VL+ ENI S+ E
Sbjct: 131 NEILKDVATFKKRKKKNSVPCDIQEEMGVICVLVDKENIESMERE 175
>UniRef50_UPI000021D358 Cluster: PREDICTED: similar to LSM3 homolog,
U6 small nuclear RNA associated; n=3; Homo/Pan/Gorilla
group|Rep: PREDICTED: similar to LSM3 homolog, U6 small
nuclear RNA associated - Homo sapiens
Length = 101
Score = 31.1 bits (67), Expect = 7.1
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +3
Query: 114 RVRVILQDSRTFIVTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGFVLL 284
R+ V +++ R +D+H+N+ILGD EE +I + + K+ + L
Sbjct: 27 RICVKMRNDRELRGRLHTYDQHLNMILGDVEETVTTIEIDEETYEETYESTKQNIPVFFL 86
Query: 285 RGENI 299
RG+ I
Sbjct: 87 RGDGI 91
>UniRef50_Q7RDC9 Cluster: Putative uncharacterized protein PY05493;
n=2; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein PY05493 - Plasmodium yoelii yoelii
Length = 594
Score = 31.1 bits (67), Expect = 7.1
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +3
Query: 54 NHSDKMTIGKNNKMQQHINYRVRVILQ 134
N SD+ GKNNK+ Q IN +V ILQ
Sbjct: 391 NVSDRKDQGKNNKIDQEINSKVYSILQ 417
>UniRef50_Q9P779 Cluster: Autophagy associated protein; n=1;
Schizosaccharomyces pombe|Rep: Autophagy associated
protein - Schizosaccharomyces pombe (Fission yeast)
Length = 390
Score = 31.1 bits (67), Expect = 7.1
Identities = 22/82 (26%), Positives = 34/82 (41%)
Frame = +3
Query: 114 RVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGE 293
+V +QD ++V FK+ K + E F++I NS D+ + FV
Sbjct: 231 KVITSIQDLEDYMVVFKSLIKSREQKVKQFEHFQQIVQSNSNNPDQSSRSDPNFV--EAT 288
Query: 294 NIVSLTIEGPPPPQEGSASRSL 359
+V T E P P + SL
Sbjct: 289 PVVQQTPELKPSPNTTIRTSSL 310
>UniRef50_Q75CP4 Cluster: ACL125Cp; n=1; Eremothecium gossypii|Rep:
ACL125Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 106
Score = 31.1 bits (67), Expect = 7.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEE 209
+++++ RV V+ D + T + FDK NL+L D +
Sbjct: 5 LKEYLGRRVVVVTTDGGCLVATLEGFDKTANLLLSDVRQ 43
>UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like; n=1; Debaryomyces
hansenii|Rep: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like - Debaryomyces hansenii
(Yeast) (Torulaspora hansenii)
Length = 93
Score = 31.1 bits (67), Expect = 7.1
Identities = 11/40 (27%), Positives = 26/40 (65%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEF 212
+ + I ++++V++ + + F T FD ++N++L + EEF
Sbjct: 27 IDKSIGHKIQVLMTNDKEFKGTLIGFDDYVNMVLENVEEF 66
>UniRef50_A7TII8 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 109
Score = 31.1 bits (67), Expect = 7.1
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEE 209
++ ++N ++ +I + R + T + FDK+ NL+L +
Sbjct: 5 LKDYLNKKIVIITTEGRCLLATLEGFDKNTNLVLSQVHD 43
>UniRef50_A4RG53 Cluster: Predicted protein; n=1; Magnaporthe
grisea|Rep: Predicted protein - Magnaporthe grisea (Rice
blast fungus) (Pyricularia grisea)
Length = 128
Score = 31.1 bits (67), Expect = 7.1
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 21/92 (22%)
Frame = +3
Query: 105 INYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFR------------KI-KSKNSKTA 245
+N +RV D+R F FK D NLIL E+R K+ +K++ A
Sbjct: 14 LNKYLRVTTTDTRMFYGVFKCTDPDRNLILAHAHEYRHPTPEQVAAHAKKVAAAKDAGEA 73
Query: 246 DREE--------KRTLGFVLLRGENIVSLTIE 317
D ++ R LG +++ GE+IV + +E
Sbjct: 74 DADDDKMTLGMTSRYLGLIVVPGEHIVKIEVE 105
>UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm;
n=1; Aeropyrum pernix|Rep: Putative small nucleolar RNP
protein Sm - Aeropyrum pernix
Length = 94
Score = 31.1 bits (67), Expect = 7.1
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 66 KMTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEE 209
K + +++H+N ++ V L+D ++ A D MNLIL D E
Sbjct: 7 KQLVNPFKYLKEHLNSQIYVKLKDGSEYVGKLVATDTTMNLILDDAIE 54
>UniRef50_UPI00004984BB Cluster: small nuclear ribonucleoprotein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein - Entamoeba histolytica HM-1:IMSS
Length = 89
Score = 30.7 bits (66), Expect = 9.4
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +3
Query: 156 TFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 299
T FD+++NL+L D EE +K+ +R +G +LL+GENI
Sbjct: 42 TLSGFDQYINLVLTDTEEV-YLKTNT--------RRKIGTILLKGENI 80
>UniRef50_UPI000023D4AE Cluster: hypothetical protein FG10837.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG10837.1 - Gibberella zeae PH-1
Length = 538
Score = 30.7 bits (66), Expect = 9.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 352 READPSCGGGGPSIVNETIFSPRKRTKPKV 263
+E + G P + +E ++ P+K TKPKV
Sbjct: 20 KELEAELGNRPPQVKDEEVYDPKKSTKPKV 49
>UniRef50_Q22U59 Cluster: Putative uncharacterized protein; n=2;
cellular organisms|Rep: Putative uncharacterized protein
- Tetrahymena thermophila SB210
Length = 1231
Score = 30.7 bits (66), Expect = 9.4
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +3
Query: 72 TIGKNNKMQQHINYRVRVILQDS--RTFIVTFKAFDKHMNLILGD 200
T+ + +++++YRV+ ILQDS ++ I T K + +N +G+
Sbjct: 212 TLKSDETSREYLHYRVQEILQDSYVKSLIQTLKEMQRQLNYQVGE 256
>UniRef50_Q9C252 Cluster: Probable small nuclear ribonucleoprotein
chain D2; n=1; Neurospora crassa|Rep: Probable small
nuclear ribonucleoprotein chain D2 - Neurospora crassa
Length = 126
Score = 30.7 bits (66), Expect = 9.4
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +3
Query: 114 RVRVILQDSRTFIVTFKAFDKHMNLILGDCEE 209
+V + +++ R + KAFD+HMN++L + +E
Sbjct: 49 QVLISVRNGRKILARVKAFDRHMNMVLENVKE 80
>UniRef50_Q7SG45 Cluster: Predicted protein; n=1; Neurospora
crassa|Rep: Predicted protein - Neurospora crassa
Length = 178
Score = 30.7 bits (66), Expect = 9.4
Identities = 22/62 (35%), Positives = 29/62 (46%)
Frame = +3
Query: 30 PNI**YLPNHSDKMTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEE 209
PNI +LP D T N+ + N +RV + D R F FK D N+IL E
Sbjct: 5 PNIT-FLPEDRDDATDWLNSLL----NKNLRVSVTDGRMFWGQFKCVDAESNIILHSAYE 59
Query: 210 FR 215
+R
Sbjct: 60 YR 61
>UniRef50_Q4PED8 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 134
Score = 30.7 bits (66), Expect = 9.4
Identities = 19/81 (23%), Positives = 40/81 (49%)
Frame = +3
Query: 66 KMTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTA 245
KM ++++ ++ R+ V +Q R T + FD +NL++ + E ++ N
Sbjct: 47 KMAKVSQPELKRFLDKRIAVNIQGGRKIQGTLRGFDMFLNLVVDEAIEQVHPEAGNPNVW 106
Query: 246 DREEKRTLGFVLLRGENIVSL 308
++ G V++RG ++ SL
Sbjct: 107 QDGDR--CGTVVVRGNSVTSL 125
>UniRef50_Q97XM2 Cluster: Putative uncharacterized protein; n=1;
Sulfolobus solfataricus|Rep: Putative uncharacterized
protein - Sulfolobus solfataricus
Length = 217
Score = 30.7 bits (66), Expect = 9.4
Identities = 22/77 (28%), Positives = 37/77 (48%)
Frame = +3
Query: 84 NNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKR 263
N +++++NYR ++ I+ F KH+ +LG E+ KIK K+ K K
Sbjct: 59 NEFIEEYVNYRNKLEQITREKPIIISSRFFKHLIDLLG--EDLEKIKEKSYKLGKEWGKE 116
Query: 264 TLGFVLLRGENIVSLTI 314
L +L N+ S T+
Sbjct: 117 YL--LLWNNSNVSSTTL 131
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 327,783,610
Number of Sequences: 1657284
Number of extensions: 5360466
Number of successful extensions: 18069
Number of sequences better than 10.0: 137
Number of HSP's better than 10.0 without gapping: 17567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18022
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14444021678
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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