Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0194
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    87   1e-18
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch...    39   3e-04
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo...    33   0.015
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    32   0.026
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    32   0.026
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy...    32   0.034
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    31   0.060
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch...    30   0.10 
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         29   0.32 
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    27   0.74 
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    25   5.2  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   6.9  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    24   6.9  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    24   9.1  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    24   9.1  

>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 86.6 bits (205), Expect = 1e-18
 Identities = 43/93 (46%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
 Frame = +3

Query: 90  KMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKN-SKTADREEKRT 266
           KM   +N+ + V  +D RTF+    AFD  MNL+L DC+E+R IK +N    +  EEKR 
Sbjct: 5   KMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRM 64

Query: 267 LGFVLLRGENIVSLTIEGPPPPQEGSASRSLTG 365
           LG V+LRGE IVSL+++GPPP         L+G
Sbjct: 65  LGLVILRGEFIVSLSVQGPPPMDPSMRGSLLSG 97


>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 94

 Score = 38.7 bits (86), Expect = 3e-04
 Identities = 26/62 (41%), Positives = 32/62 (51%)
 Frame = +3

Query: 114 RVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGE 293
           RV+VI  D R  + + K FD   NLIL D   F +I S +       E   LG  LLRGE
Sbjct: 10  RVQVITNDGRVVLGSLKGFDHTTNLILSD--SFERIISMDQDM----ETIPLGVYLLRGE 63

Query: 294 NI 299
           N+
Sbjct: 64  NV 65


>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
           Smd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 115

 Score = 33.1 bits (72), Expect = 0.015
 Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
 Frame = +3

Query: 66  KMTIGKNNKMQQHINYRVRVIL--QDSRTFIVTFKAFDKHMNLILGDCEEF---RKIKSK 230
           + + G  + +QQ +    +V++  ++++  +   KAFD+H N++L + +E    +K  + 
Sbjct: 24  EFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTAS 83

Query: 231 NSKTADREEKRTLGFVLLRGENIV 302
             K     + R +  + LRG+ +V
Sbjct: 84  GKKGKAINKDRFISKMFLRGDGVV 107


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 32.3 bits (70), Expect = 0.026
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +3

Query: 117 VRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEK---RTLGFVLLR 287
           V V L+  R       A+D+H+N++LGD EE   I        D+  K   +    + +R
Sbjct: 22  VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVR 81

Query: 288 GENIV 302
           G++++
Sbjct: 82  GDSVI 86


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 32.3 bits (70), Expect = 0.026
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +3

Query: 93  MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
           + ++ + R++      R      K FD+ MNL+L D EE  +       T      R LG
Sbjct: 28  LSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTG---AIRKLG 84

Query: 273 FVLLRGENIV 302
            V++RG  +V
Sbjct: 85  LVVVRGTTLV 94


>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 84

 Score = 31.9 bits (69), Expect = 0.034
 Identities = 21/69 (30%), Positives = 35/69 (50%)
 Frame = +3

Query: 93  MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
           +QQH    + +  Q         + FD+ MN++L D  +   + +KN+K       R LG
Sbjct: 20  LQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQ---VDAKNNK-------RELG 69

Query: 273 FVLLRGENI 299
            +LL+G+NI
Sbjct: 70  RILLKGDNI 78


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 31.1 bits (67), Expect = 0.060
 Identities = 22/82 (26%), Positives = 34/82 (41%)
 Frame = +3

Query: 114 RVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGE 293
           +V   +QD   ++V FK+  K     +   E F++I   NS   D+  +    FV     
Sbjct: 231 KVITSIQDLEDYMVVFKSLIKSREQKVKQFEHFQQIVQSNSNNPDQSSRSDPNFV--EAT 288

Query: 294 NIVSLTIEGPPPPQEGSASRSL 359
            +V  T E  P P     + SL
Sbjct: 289 PVVQQTPELKPSPNTTIRTSSL 310


>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
           Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 80

 Score = 30.3 bits (65), Expect = 0.10
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +3

Query: 69  MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
           MTI     + + I   + VI++  R F  T   FD ++N++L D  E+  +     K ++
Sbjct: 3   MTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSE 62


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 28.7 bits (61), Expect = 0.32
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -3

Query: 185 IHVFIKSFKSYNKCTRVL*YNPYSIINMLLHL-IVFADRHFI 63
           IH+++K   +Y +C RV     Y II+ LL++ I+F   +++
Sbjct: 6   IHLYVKKDLTYGECVRVA-KEKYKIIHRLLYISIIFLFLNYV 46


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.5 bits (58), Expect = 0.74
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +3

Query: 171 DKHMNLILGDCEEFRKIKSKNS-KTADREEKRTLGFVLLRGENIVSLTIEGPPPPQEGSA 347
           D+ MNL     E++ K KSK + + A+RE+ R+ G  LL  ++   L  E   P    S 
Sbjct: 459 DESMNLYAELQEQWLKDKSKKARRRAEREKLRSEG--LLGKKSKKKLLRESQKPSSSDSD 516

Query: 348 SRSLT 362
           + SLT
Sbjct: 517 NASLT 521


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = -3

Query: 377 PPIAP-GKGTRGGSFLWWRWSF 315
           P IAP   G   GS + WRW F
Sbjct: 177 PAIAPIASGFIAGSSISWRWEF 198


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = -3

Query: 260 FFFSVCSFTIFRFNFSEFFAIT*Y*IHVFIKSFKSYNKCTRV 135
           FF  VC F  F F+ S   ++    + + ++ F + ++  R+
Sbjct: 159 FFLCVCVFLSFLFSLSHLLSLAILFLPLLLRVFSTLSRLPRL 200


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPPPQEGSASRSLTGSYG 374
           R+ ++    + L   +++ L     PP ++G+ S+S   SYG
Sbjct: 493 RDSRKRPSAIDLLSSHVIRLGTAVLPPVEQGTFSKSARPSYG 534


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 171 DKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGE 293
           D +M+L+   CE+ RK+   + +   + EK  +  + L+ E
Sbjct: 125 DPNMSLMQDICEKIRKLDIVDLRAPKKPEKEAMNELELKRE 165


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 258 KRTLGFVLLRGENIVSLTIEGPP 326
           KR +G VL+RG  +++    G P
Sbjct: 219 KRRVGCVLVRGNRVIATGYNGTP 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,383,654
Number of Sequences: 5004
Number of extensions: 23561
Number of successful extensions: 62
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)