Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0194
(379 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 153 1e-37
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 153 1e-37
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 153 1e-37
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 153 1e-37
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 153 1e-37
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 153 1e-37
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 153 1e-37
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 153 1e-37
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 153 1e-37
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 152 4e-37
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 150 1e-36
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 150 1e-36
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 150 1e-36
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 150 1e-36
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 150 1e-36
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 150 1e-36
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 150 1e-36
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 150 1e-36
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 150 1e-36
AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear ribonucle... 149 4e-36
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 147 1e-35
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 147 1e-35
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 143 2e-34
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 143 2e-34
X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antige... 117 1e-26
BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for MG... 92 6e-19
AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear ribonucl... 92 6e-19
BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein. 45 7e-05
BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein. 45 7e-05
BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1... 45 7e-05
BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein. 45 7e-05
AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate immuno... 45 7e-05
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 40 0.002
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 40 0.002
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 40 0.002
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 40 0.002
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 40 0.002
CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein. 37 0.025
BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small ... 37 0.025
AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein. 37 0.025
AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein. 37 0.025
AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated Sm-... 37 0.025
BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small ... 35 0.076
AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated Sm-... 35 0.076
AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated Sm-... 35 0.076
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 35 0.10
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 35 0.10
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 35 0.10
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 35 0.10
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 35 0.10
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 35 0.10
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 35 0.10
BC012430-1|AAH12430.1| 360|Homo sapiens SEH1-like (S. cerevisia... 32 0.71
AK056940-1|BAB71317.1| 421|Homo sapiens protein ( Homo sapiens ... 32 0.71
AF514996-1|AAM76707.1| 360|Homo sapiens nucleoporin Seh1 protein. 32 0.71
AF431970-1|AAM44214.1| 421|Homo sapiens putative nucleoporin pr... 32 0.71
AF255625-1|AAM21169.1| 360|Homo sapiens putative nucleoporin pr... 32 0.71
AF136976-1|AAG49437.1| 360|Homo sapiens sec13-like protein prot... 32 0.71
U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein. 30 2.2
BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear ribonucle... 30 2.2
BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear ribonucle... 30 2.2
AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein. 30 2.2
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 153 bits (372), Expect = 1e-37
Identities = 72/102 (70%), Positives = 83/102 (81%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
MT+GK++KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPPPQEGSASRSLTGSYG 374
REEKR LG VLLRGEN+VS+T+EGPPP G A L G+ G
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG 102
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 153 bits (372), Expect = 1e-37
Identities = 72/102 (70%), Positives = 83/102 (81%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
MT+GK++KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPPPQEGSASRSLTGSYG 374
REEKR LG VLLRGEN+VS+T+EGPPP G A L G+ G
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG 102
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 153 bits (372), Expect = 1e-37
Identities = 72/102 (70%), Positives = 83/102 (81%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
MT+GK++KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPPPQEGSASRSLTGSYG 374
REEKR LG VLLRGEN+VS+T+EGPPP G A L G+ G
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG 102
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 153 bits (372), Expect = 1e-37
Identities = 72/102 (70%), Positives = 83/102 (81%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
MT+GK++KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPPPQEGSASRSLTGSYG 374
REEKR LG VLLRGEN+VS+T+EGPPP G A L G+ G
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG 102
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 153 bits (372), Expect = 1e-37
Identities = 72/102 (70%), Positives = 83/102 (81%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
MT+GK++KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPPPQEGSASRSLTGSYG 374
REEKR LG VLLRGEN+VS+T+EGPPP G A L G+ G
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG 102
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 153 bits (372), Expect = 1e-37
Identities = 72/102 (70%), Positives = 83/102 (81%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
MT+GK++KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPPPQEGSASRSLTGSYG 374
REEKR LG VLLRGEN+VS+T+EGPPP G A L G+ G
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG 102
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 153 bits (372), Expect = 1e-37
Identities = 72/102 (70%), Positives = 83/102 (81%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
MT+GK++KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPPPQEGSASRSLTGSYG 374
REEKR LG VLLRGEN+VS+T+EGPPP G A L G+ G
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG 102
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 153 bits (372), Expect = 1e-37
Identities = 72/102 (70%), Positives = 83/102 (81%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
MT+GK++KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPPPQEGSASRSLTGSYG 374
REEKR LG VLLRGEN+VS+T+EGPPP G A L G+ G
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG 102
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 153 bits (372), Expect = 1e-37
Identities = 72/102 (70%), Positives = 83/102 (81%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
MT+GK++KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPPPQEGSASRSLTGSYG 374
REEKR LG VLLRGEN+VS+T+EGPPP G A L G+ G
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG 102
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 152 bits (368), Expect = 4e-37
Identities = 71/102 (69%), Positives = 83/102 (81%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
MT+GK++KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK KNS+ A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAE 60
Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPPPQEGSASRSLTGSYG 374
REEKR LG VLLRGEN+VS+T+EGPPP G A L G+ G
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG 102
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 150 bits (364), Expect = 1e-36
Identities = 70/102 (68%), Positives = 82/102 (80%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
MT+GK++KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPPPQEGSASRSLTGSYG 374
REEKR LG VLLRGEN+VS+T+EGPPP G A L G+ G
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG 102
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 150 bits (364), Expect = 1e-36
Identities = 70/102 (68%), Positives = 82/102 (80%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
MT+GK++KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPPPQEGSASRSLTGSYG 374
REEKR LG VLLRGEN+VS+T+EGPPP G A L G+ G
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG 102
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 150 bits (364), Expect = 1e-36
Identities = 70/102 (68%), Positives = 82/102 (80%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
MT+GK++KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPPPQEGSASRSLTGSYG 374
REEKR LG VLLRGEN+VS+T+EGPPP G A L G+ G
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG 102
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 150 bits (364), Expect = 1e-36
Identities = 70/102 (68%), Positives = 82/102 (80%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
MT+GK++KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPPPQEGSASRSLTGSYG 374
REEKR LG VLLRGEN+VS+T+EGPPP G A L G+ G
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG 102
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 150 bits (364), Expect = 1e-36
Identities = 70/102 (68%), Positives = 82/102 (80%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
MT+GK++KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPPPQEGSASRSLTGSYG 374
REEKR LG VLLRGEN+VS+T+EGPPP G A L G+ G
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG 102
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 150 bits (364), Expect = 1e-36
Identities = 70/102 (68%), Positives = 82/102 (80%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
MT+GK++KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPPPQEGSASRSLTGSYG 374
REEKR LG VLLRGEN+VS+T+EGPPP G A L G+ G
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG 102
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 150 bits (364), Expect = 1e-36
Identities = 70/102 (68%), Positives = 82/102 (80%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
MT+GK++KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPPPQEGSASRSLTGSYG 374
REEKR LG VLLRGEN+VS+T+EGPPP G A L G+ G
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG 102
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 150 bits (364), Expect = 1e-36
Identities = 70/102 (68%), Positives = 82/102 (80%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
MT+GK++KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPPPQEGSASRSLTGSYG 374
REEKR LG VLLRGEN+VS+T+EGPPP G A L G+ G
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG 102
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 150 bits (364), Expect = 1e-36
Identities = 70/102 (68%), Positives = 82/102 (80%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
MT+GK++KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPPPQEGSASRSLTGSYG 374
REEKR LG VLLRGEN+VS+T+EGPPP G A L G+ G
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG 102
>AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N variant protein.
Length = 240
Score = 149 bits (360), Expect = 4e-36
Identities = 70/102 (68%), Positives = 81/102 (79%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
MT+GK++KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCGEFRKIKPKNAKQPE 60
Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPPPQEGSASRSLTGSYG 374
REEKR LG VLLRGEN+VS+T+EGPPP G A L G+ G
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG 102
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 147 bits (356), Expect = 1e-35
Identities = 67/87 (77%), Positives = 77/87 (88%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
MT+GK++KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPP 329
REEKR LG VLLRGEN+VS+T+EGPPP
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPP 87
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 147 bits (356), Expect = 1e-35
Identities = 67/87 (77%), Positives = 77/87 (88%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
MT+GK++KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 249 REEKRTLGFVLLRGENIVSLTIEGPPP 329
REEKR LG VLLRGEN+VS+T+EGPPP
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPP 87
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 143 bits (346), Expect = 2e-34
Identities = 68/95 (71%), Positives = 76/95 (80%)
Frame = +3
Query: 90 KMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 269
KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK KNSK A+REEKR L
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVL 60
Query: 270 GFVLLRGENIVSLTIEGPPPPQEGSASRSLTGSYG 374
G VLLRGEN+VS+T+EGPPP G A L G+ G
Sbjct: 61 GLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG 95
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 143 bits (346), Expect = 2e-34
Identities = 68/95 (71%), Positives = 76/95 (80%)
Frame = +3
Query: 90 KMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 269
KM QHI+YR+R ILQD R FI TFKAFDKHMNLIL DC+EFRKIK KNSK A+REEKR L
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVL 60
Query: 270 GFVLLRGENIVSLTIEGPPPPQEGSASRSLTGSYG 374
G VLLRGEN+VS+T+EGPPP G A L G+ G
Sbjct: 61 GLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG 95
>X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antigene
protein.
Length = 218
Score = 117 bits (282), Expect = 1e-26
Identities = 55/80 (68%), Positives = 62/80 (77%)
Frame = +3
Query: 135 DSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 314
D R FI TFKAFDKHMNLIL DC+EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 1 DGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTV 60
Query: 315 EGPPPPQEGSASRSLTGSYG 374
EGPPP G A L G+ G
Sbjct: 61 EGPPPKDTGIARVPLAGAAG 80
>BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for
MGC:71285) protein.
Length = 208
Score = 91.9 bits (218), Expect = 6e-19
Identities = 42/68 (61%), Positives = 53/68 (77%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
+T+GK++KM H ++R+R ILQD R FI TFKAFDKHMN+I DC+EFRK+K KN+K
Sbjct: 41 VTVGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPA 100
Query: 249 REEKRTLG 272
REEKR G
Sbjct: 101 REEKRVSG 108
>AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear
ribonucleoprotein N (SNRPN) pseudogene protein.
Length = 208
Score = 91.9 bits (218), Expect = 6e-19
Identities = 42/68 (61%), Positives = 53/68 (77%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 248
+T+GK++KM H ++R+R ILQD R FI TFKAFDKHMN+I DC+EFRK+K KN+K
Sbjct: 41 VTVGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPA 100
Query: 249 REEKRTLG 272
REEKR G
Sbjct: 101 REEKRVSG 108
>BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 45.2 bits (102), Expect = 7e-05
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Frame = +3
Query: 90 KMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 269
+++ +N +R+ + D RT + F D+ N+ILG +EF +K +S +A E R L
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVL 99
Query: 270 GFVLLRGENIVSLTIE-----GPP 326
G ++ G +IVS+ ++ GPP
Sbjct: 100 GLAMVPGHHIVSIEVQRESLTGPP 123
>BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 45.2 bits (102), Expect = 7e-05
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Frame = +3
Query: 90 KMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 269
+++ +N +R+ + D RT + F D+ N+ILG +EF +K +S +A E R L
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVL 99
Query: 270 GFVLLRGENIVSLTIE-----GPP 326
G ++ G +IVS+ ++ GPP
Sbjct: 100 GLAMVPGHHIVSIEVQRESLTGPP 123
>BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1
protein.
Length = 173
Score = 45.2 bits (102), Expect = 7e-05
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Frame = +3
Query: 90 KMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 269
+++ +N +R+ + D RT + F D+ N+ILG +EF +K +S +A E R L
Sbjct: 92 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVL 147
Query: 270 GFVLLRGENIVSLTIE-----GPP 326
G ++ G +IVS+ ++ GPP
Sbjct: 148 GLAMVPGHHIVSIEVQRESLTGPP 171
>BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 45.2 bits (102), Expect = 7e-05
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Frame = +3
Query: 90 KMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 269
+++ +N +R+ + D RT + F D+ N+ILG +EF +K +S +A E R L
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVL 99
Query: 270 GFVLLRGENIVSLTIE-----GPP 326
G ++ G +IVS+ ++ GPP
Sbjct: 100 GLAMVPGHHIVSIEVQRESLTGPP 123
>AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate
immuno-associated protein 2 protein.
Length = 125
Score = 45.2 bits (102), Expect = 7e-05
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Frame = +3
Query: 90 KMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 269
+++ +N +R+ + D RT + F D+ N+ILG +EF +K +S +A E R L
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVL 99
Query: 270 GFVLLRGENIVSLTIE-----GPP 326
G ++ G +IVS+ ++ GPP
Sbjct: 100 GLAMVPGHHIVSIEVQRESLTGPP 123
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 40.3 bits (90), Expect = 0.002
Identities = 24/69 (34%), Positives = 36/69 (52%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
++ +IN V VI D R + T K FD+ +NLIL + E R S E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLG 58
Query: 273 FVLLRGENI 299
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 40.3 bits (90), Expect = 0.002
Identities = 24/69 (34%), Positives = 36/69 (52%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
++ +IN V VI D R + T K FD+ +NLIL + E R S E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLG 58
Query: 273 FVLLRGENI 299
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 40.3 bits (90), Expect = 0.002
Identities = 24/69 (34%), Positives = 36/69 (52%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
++ +IN V VI D R + T K FD+ +NLIL + E R S E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLG 58
Query: 273 FVLLRGENI 299
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 40.3 bits (90), Expect = 0.002
Identities = 24/69 (34%), Positives = 36/69 (52%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
++ +IN V VI D R + T K FD+ +NLIL + E R S E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLG 58
Query: 273 FVLLRGENI 299
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 40.3 bits (90), Expect = 0.002
Identities = 24/69 (34%), Positives = 36/69 (52%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
++ +IN V VI D R + T K FD+ +NLIL + E R S E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLG 58
Query: 273 FVLLRGENI 299
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein.
Length = 102
Score = 36.7 bits (81), Expect = 0.025
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +3
Query: 105 INYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 275
++ R+ V +++ R A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 276 VLLRGENIV 302
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 102
Score = 36.7 bits (81), Expect = 0.025
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +3
Query: 105 INYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 275
++ R+ V +++ R A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 276 VLLRGENIV 302
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein.
Length = 102
Score = 36.7 bits (81), Expect = 0.025
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +3
Query: 105 INYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 275
++ R+ V +++ R A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 276 VLLRGENIV 302
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein.
Length = 102
Score = 36.7 bits (81), Expect = 0.025
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +3
Query: 105 INYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 275
++ R+ V +++ R A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 276 VLLRGENIV 302
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated
Sm-like protein LSm3 protein.
Length = 102
Score = 36.7 bits (81), Expect = 0.025
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +3
Query: 105 INYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 275
++ R+ V +++ R A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 276 VLLRGENIV 302
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 103
Score = 35.1 bits (77), Expect = 0.076
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
+ ++I+ +RV Q R K FD +NL+L E+ + K E+ R LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT--EDTRQLG 72
Query: 273 FVLLRGENIV 302
V+ RG ++V
Sbjct: 73 LVVCRGTSVV 82
>AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 35.1 bits (77), Expect = 0.076
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
+ ++I+ +RV Q R K FD +NL+L E+ + K E+ R LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT--EDTRQLG 72
Query: 273 FVLLRGENIV 302
V+ RG ++V
Sbjct: 73 LVVCRGTSVV 82
>AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 35.1 bits (77), Expect = 0.076
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +3
Query: 93 MQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 272
+ ++I+ +RV Q R K FD +NL+L E+ + K E+ R LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT--EDTRQLG 72
Query: 273 FVLLRGENIV 302
V+ RG ++V
Sbjct: 73 LVVCRGTSVV 82
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 34.7 bits (76), Expect = 0.10
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +3
Query: 168 FDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSL 308
FD++MNL+L D EE +SKT R++ LG ++L+G+NI L
Sbjct: 50 FDEYMNLVLDDAEEI------HSKTKSRKQ---LGRIMLKGDNITLL 87
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 34.7 bits (76), Expect = 0.10
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +3
Query: 168 FDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSL 308
FD++MNL+L D EE +SKT R++ LG ++L+G+NI L
Sbjct: 50 FDEYMNLVLDDAEEI------HSKTKSRKQ---LGRIMLKGDNITLL 87
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 34.7 bits (76), Expect = 0.10
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +3
Query: 168 FDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSL 308
FD++MNL+L D EE +SKT R++ LG ++L+G+NI L
Sbjct: 50 FDEYMNLVLDDAEEI------HSKTKSRKQ---LGRIMLKGDNITLL 87
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 34.7 bits (76), Expect = 0.10
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +3
Query: 168 FDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSL 308
FD++MNL+L D EE +SKT R++ LG ++L+G+NI L
Sbjct: 39 FDEYMNLVLDDAEEI------HSKTKSRKQ---LGRIMLKGDNITLL 76
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 34.7 bits (76), Expect = 0.10
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +3
Query: 168 FDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSL 308
FD++MNL+L D EE +SKT R++ LG ++L+G+NI L
Sbjct: 50 FDEYMNLVLDDAEEI------HSKTKSRKQ---LGRIMLKGDNITLL 87
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 34.7 bits (76), Expect = 0.10
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +3
Query: 168 FDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSL 308
FD++MNL+L D EE +SKT R++ LG ++L+G+NI L
Sbjct: 50 FDEYMNLVLDDAEEI------HSKTKSRKQ---LGRIMLKGDNITLL 87
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 34.7 bits (76), Expect = 0.10
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +3
Query: 168 FDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSL 308
FD++MNL+L D EE +SKT R++ LG ++L+G+NI L
Sbjct: 50 FDEYMNLVLDDAEEI------HSKTKSRKQ---LGRIMLKGDNITLL 87
>BC012430-1|AAH12430.1| 360|Homo sapiens SEH1-like (S. cerevisiae)
protein.
Length = 360
Score = 31.9 bits (69), Expect = 0.71
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 84 NNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDC 203
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AK056940-1|BAB71317.1| 421|Homo sapiens protein ( Homo sapiens
cDNA FLJ32378 fis, clone SKMUS1000022, weakly similar to
NUCLEAR PORE PROTEIN SEH1 HOMOLOG. ).
Length = 421
Score = 31.9 bits (69), Expect = 0.71
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 84 NNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDC 203
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF514996-1|AAM76707.1| 360|Homo sapiens nucleoporin Seh1 protein.
Length = 360
Score = 31.9 bits (69), Expect = 0.71
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 84 NNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDC 203
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF431970-1|AAM44214.1| 421|Homo sapiens putative nucleoporin
protein SEH1B protein.
Length = 421
Score = 31.9 bits (69), Expect = 0.71
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 84 NNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDC 203
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF255625-1|AAM21169.1| 360|Homo sapiens putative nucleoporin
protein SEH1A protein.
Length = 360
Score = 31.9 bits (69), Expect = 0.71
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 84 NNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDC 203
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF136976-1|AAG49437.1| 360|Homo sapiens sec13-like protein
protein.
Length = 360
Score = 31.9 bits (69), Expect = 0.71
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 84 NNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDC 203
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein.
Length = 118
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +3
Query: 108 NYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR----EEKRTLGF 275
N +V + ++++ + KAFD+H N++L + +E K+ K + + R +
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISK 98
Query: 276 VLLRGENIV 302
+ LRG++++
Sbjct: 99 MFLRGDSVI 107
>BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +3
Query: 108 NYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR----EEKRTLGF 275
N +V + ++++ + KAFD+H N++L + +E K+ K + + R +
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISK 98
Query: 276 VLLRGENIV 302
+ LRG++++
Sbjct: 99 MFLRGDSVI 107
>BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +3
Query: 108 NYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR----EEKRTLGF 275
N +V + ++++ + KAFD+H N++L + +E K+ K + + R +
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISK 98
Query: 276 VLLRGENIV 302
+ LRG++++
Sbjct: 99 MFLRGDSVI 107
>AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein.
Length = 118
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +3
Query: 108 NYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR----EEKRTLGF 275
N +V + ++++ + KAFD+H N++L + +E K+ K + + R +
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISK 98
Query: 276 VLLRGENIV 302
+ LRG++++
Sbjct: 99 MFLRGDSVI 107
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,588,470
Number of Sequences: 237096
Number of extensions: 799088
Number of successful extensions: 2361
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 2259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2348
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2536788584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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