Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0194
(379 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 126 6e-30
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 123 5e-29
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 123 5e-29
At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putati... 44 4e-05
At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putati... 44 4e-05
At4g18372.1 68417.m02725 small nuclear ribonucleoprotein-related... 36 0.009
At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putati... 33 0.048
At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putati... 33 0.048
At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, puta... 33 0.063
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 32 0.15
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 32 0.15
At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E, puta... 31 0.25
At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, puta... 31 0.34
At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E, puta... 30 0.44
At3g62840.1 68416.m07060 small nuclear ribonucleoprotein D2, put... 29 1.0
At2g47640.3 68415.m05946 small nuclear ribonucleoprotein D2, put... 29 1.0
At2g47640.2 68415.m05945 small nuclear ribonucleoprotein D2, put... 29 1.0
At2g47640.1 68415.m05944 small nuclear ribonucleoprotein D2, put... 29 1.0
At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putati... 29 1.0
At5g58630.1 68418.m07347 expressed protein 28 1.8
At1g77770.2 68414.m09056 expressed protein 28 2.4
At1g77770.1 68414.m09055 expressed protein 28 2.4
At5g35610.1 68418.m04249 paired amphipathic helix repeat-contain... 27 5.5
At5g17850.1 68418.m02092 cation exchanger, putative (CAX8) simil... 26 9.6
At1g65440.1 68414.m07424 glycine-rich protein 26 9.6
At1g50660.1 68414.m05696 expressed protein similar to liver stag... 26 9.6
At1g17400.1 68414.m02124 hypothetical protein 26 9.6
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 126 bits (303), Expect = 6e-30
Identities = 60/106 (56%), Positives = 77/106 (72%), Gaps = 4/106 (3%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKI---KSKNSK 239
M++ K++KM Q INYR+RV +QD R I F AFD+HMNL+LGDCEEFRK+ K
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60
Query: 240 TADREEKRTLGFVLLRGENIVSLTIEGPPPPQEGSA-SRSLTGSYG 374
+REE+RTLG VLLRGE ++S+T+EGPPPP+E A S S+T G
Sbjct: 61 NEEREERRTLGLVLLRGEEVISMTVEGPPPPEESRAKSGSVTAVAG 106
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 123 bits (296), Expect = 5e-29
Identities = 54/95 (56%), Positives = 72/95 (75%), Gaps = 2/95 (2%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSK--T 242
M++ K++KM Q INYR+RV +QD R + F AFD+HMNL+LGDCEEFRK+ K
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60
Query: 243 ADREEKRTLGFVLLRGENIVSLTIEGPPPPQEGSA 347
+RE++RTLG VLLRGE ++S+T+EGPPPP+E A
Sbjct: 61 EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRA 95
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 123 bits (296), Expect = 5e-29
Identities = 54/95 (56%), Positives = 72/95 (75%), Gaps = 2/95 (2%)
Frame = +3
Query: 69 MTIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSK--T 242
M++ K++KM Q INYR+RV +QD R + F AFD+HMNL+LGDCEEFRK+ K
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60
Query: 243 ADREEKRTLGFVLLRGENIVSLTIEGPPPPQEGSA 347
+RE++RTLG VLLRGE ++S+T+EGPPPP+E A
Sbjct: 61 EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRA 95
>At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 98
Score = 43.6 bits (98), Expect = 4e-05
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +3
Query: 105 INYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD---REEKRTLGF 275
++ R+ V L+ R AFD+H+N+ILGD EE + +T + R KRT+ F
Sbjct: 20 LDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRTIEF 79
Query: 276 VLLRGENIV 302
+ +RG+ ++
Sbjct: 80 LFVRGDGVI 88
>At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 97
Score = 43.6 bits (98), Expect = 4e-05
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +3
Query: 105 INYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEF---RKIKSKNSKTADREEKRTLGF 275
I R+ V L+ R AFD+H+N+ILGD EE +I + + R KRT+ F
Sbjct: 20 IEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTKRTVPF 79
Query: 276 VLLRGENIV 302
+ +RG+ ++
Sbjct: 80 LFVRGDGVI 88
>At4g18372.1 68417.m02725 small nuclear ribonucleoprotein-related /
snRNP-related contains similarity to snRNP-associated
polypeptide N [Rattus norvegicus] GP|206694|gb|AAA42059
Length = 112
Score = 35.9 bits (79), Expect = 0.009
Identities = 19/66 (28%), Positives = 37/66 (56%)
Frame = +3
Query: 87 NKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRT 266
+++++ + ++ V ++D R F+ F DK N+IL D E+R I+ + E+R
Sbjct: 25 SRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNIILQDTVEYRSIRRSSPSPT---EQRC 81
Query: 267 LGFVLL 284
LG +L+
Sbjct: 82 LGMILI 87
>At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm5 [Homo sapiens]
SWISS-PROT:Q9Y4Y9
Length = 88
Score = 33.5 bits (73), Expect = 0.048
Identities = 22/78 (28%), Positives = 35/78 (44%)
Frame = +3
Query: 105 INYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 284
I ++ VI++ + + K FD ++N++L D E+ TA+ L +LL
Sbjct: 18 IGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEI-------TAEGRRVTKLDQILL 70
Query: 285 RGENIVSLTIEGPPPPQE 338
G NI L G P E
Sbjct: 71 NGNNIAILVPGGSPEDGE 88
>At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
SWISS-PROT:O95777
Length = 98
Score = 33.5 bits (73), Expect = 0.048
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +3
Query: 117 VRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGEN 296
+ VI D R + K FD+ N+IL + E + T + ++ LG ++RG+N
Sbjct: 15 ISVITNDGRNIVGVLKGFDQATNIILDESHE------RVFSTKEGVQQHVLGLYIIRGDN 68
Query: 297 I 299
I
Sbjct: 69 I 69
>At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to SWISS-PROT:Q15357 small nuclear
ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG)
[Homo sapiens]
Length = 79
Score = 33.1 bits (72), Expect = 0.063
Identities = 20/84 (23%), Positives = 46/84 (54%)
Frame = +3
Query: 78 GKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREE 257
G+ ++++++ ++++ L +R + T + FD+ MNL++ N+ + ++
Sbjct: 5 GQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVV-----------DNTVEVNGDD 53
Query: 258 KRTLGFVLLRGENIVSLTIEGPPP 329
K +G V++RG +IV T+E P
Sbjct: 54 KTDIGMVVIRGNSIV--TVEALEP 75
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 31.9 bits (69), Expect = 0.15
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +3
Query: 84 NNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLIL-GDCEEFRKIKSKNSKTADREEK 260
+ + +++ ++ V+L+D R + T ++FD+ N +L G CE R I ++
Sbjct: 12 STSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACE--RVI------VGEQYCD 63
Query: 261 RTLGFVLLRGENIV 302
LG ++RGEN+V
Sbjct: 64 IPLGLYVIRGENVV 77
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 31.9 bits (69), Expect = 0.15
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +3
Query: 84 NNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLIL-GDCEEFRKIKSKNSKTADREEK 260
+ + +++ ++ V+L+D R + T ++FD+ N +L G CE R I ++
Sbjct: 12 STSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACE--RVI------VGEQYCD 63
Query: 261 RTLGFVLLRGENIV 302
LG ++RGEN+V
Sbjct: 64 IPLGLYVIRGENVV 77
>At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 31.1 bits (67), Expect = 0.25
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +3
Query: 168 FDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTIEG 320
FD++MNL+L + EE IK K ++ LG +LL+G+NI + G
Sbjct: 46 FDEYMNLVLDEAEEV-SIKKKT--------RKPLGRILLKGDNITLMMNAG 87
>At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to small nuclear ribonucleoprotein G (snRNP-G,
Sm protein G, Sm-G, SmG) [Homo sapiens]
SWISS-PROT:Q15357
Length = 80
Score = 30.7 bits (66), Expect = 0.34
Identities = 20/84 (23%), Positives = 44/84 (52%)
Frame = +3
Query: 78 GKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREE 257
G+ ++++++ ++++ L +R T + FD+ MNL++ N+ + +
Sbjct: 5 GQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVV-----------DNTVEVNGND 53
Query: 258 KRTLGFVLLRGENIVSLTIEGPPP 329
K +G V++RG +IV T+E P
Sbjct: 54 KTDIGMVVIRGNSIV--TVEALEP 75
>At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 30.3 bits (65), Expect = 0.44
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +3
Query: 168 FDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTIEG 320
FD++MNL+L + EE IK KN+ ++ LG +LL+G+NI + G
Sbjct: 46 FDEYMNLVLDEAEEV-SIK-KNT-------RKPLGRILLKGDNITLMMNTG 87
>At3g62840.1 68416.m07060 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 29.1 bits (62), Expect = 1.0
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +3
Query: 108 NYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEF----RKIKSKNSKTADREEKRTLGF 275
N +V + +++R + +AFD+H N++L + E K K R +
Sbjct: 33 NTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISK 92
Query: 276 VLLRGENIV 302
+ LRG++++
Sbjct: 93 MFLRGDSVI 101
>At2g47640.3 68415.m05946 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 29.1 bits (62), Expect = 1.0
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +3
Query: 108 NYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEF----RKIKSKNSKTADREEKRTLGF 275
N +V + +++R + +AFD+H N++L + E K K R +
Sbjct: 33 NTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISK 92
Query: 276 VLLRGENIV 302
+ LRG++++
Sbjct: 93 MFLRGDSVI 101
>At2g47640.2 68415.m05945 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 29.1 bits (62), Expect = 1.0
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +3
Query: 108 NYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEF----RKIKSKNSKTADREEKRTLGF 275
N +V + +++R + +AFD+H N++L + E K K R +
Sbjct: 33 NTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISK 92
Query: 276 VLLRGENIV 302
+ LRG++++
Sbjct: 93 MFLRGDSVI 101
>At2g47640.1 68415.m05944 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 109
Score = 29.1 bits (62), Expect = 1.0
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +3
Query: 108 NYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEF----RKIKSKNSKTADREEKRTLGF 275
N +V + +++R + +AFD+H N++L + E K K R +
Sbjct: 34 NTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISK 93
Query: 276 VLLRGENIV 302
+ LRG++++
Sbjct: 94 MFLRGDSVI 102
>At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116
Length = 128
Score = 29.1 bits (62), Expect = 1.0
Identities = 19/73 (26%), Positives = 37/73 (50%)
Frame = +3
Query: 84 NNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKR 263
+ + +++ ++ V+L+D R + ++FD+ N +L + E R I D
Sbjct: 12 STSLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYE-RVI------VGDLYCDI 64
Query: 264 TLGFVLLRGENIV 302
LG ++RGEN+V
Sbjct: 65 PLGLYIIRGENVV 77
>At5g58630.1 68418.m07347 expressed protein
Length = 372
Score = 28.3 bits (60), Expect = 1.8
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +3
Query: 78 GKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR 251
GK+ +++ + Y V L+D FI++F+ L +C++ R + SKT D+
Sbjct: 107 GKHRRVKSTLEY---VELEDDDFFILSFEKDKNDKELGTRNCKKRRDTRENQSKTEDQ 161
>At1g77770.2 68414.m09056 expressed protein
Length = 264
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 72 TIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHM 182
T+ K+ +M H N + R +QD+ +F+ F+ KHM
Sbjct: 98 TVVKDARM--HFNSKRRTCMQDNCSFLGNFRKLKKHM 132
>At1g77770.1 68414.m09055 expressed protein
Length = 265
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 72 TIGKNNKMQQHINYRVRVILQDSRTFIVTFKAFDKHM 182
T+ K+ +M H N + R +QD+ +F+ F+ KHM
Sbjct: 98 TVVKDARM--HFNSKRRTCMQDNCSFLGNFRKLKKHM 132
>At5g35610.1 68418.m04249 paired amphipathic helix repeat-containing
protein weak similarity to SP|P22579 Paired amphipathic
helix protein {Saccharomyces cerevisiae}; contains Pfam
profile PF02671: Paired amphipathic helix repeat
Length = 155
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 199 IAKNSEKLNLKIVKLQTEKKKELWVLFFYV 288
I K++ + LKIVK + + K+E++V F V
Sbjct: 6 ITKSNPRKYLKIVKNKLQNKREIYVRFLQV 35
>At5g17850.1 68418.m02092 cation exchanger, putative (CAX8) similar
to sodium/calcium exchanger protein [Mus musculus]
gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 559
Score = 25.8 bits (54), Expect = 9.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 116 SKGYITRLSYIYCNF*SF 169
S+G+ LS++YCNF F
Sbjct: 70 SQGFFDYLSFLYCNFEGF 87
>At1g65440.1 68414.m07424 glycine-rich protein
Length = 1647
Score = 25.8 bits (54), Expect = 9.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 132 QDSRTFIVTFKAFDKHMNLILGDCEE 209
++ + VTFK + +MN ++ DC E
Sbjct: 609 EEEKLLQVTFKLPENYMNRLISDCNE 634
>At1g50660.1 68414.m05696 expressed protein similar to liver stage
antigen-1 (GI:510184) [Plasmodium falciparum]; similar
to Myosin II heavy chain, non muscle (Swiss-Prot:P08799)
[Dictyostelium discoideum]; similar to liver stage
antigen (GI:9916) [Plasmodium falciparum]; similar to
Kinesin-like protein KLPA (Swiss-Prot:P28739)
[Emericella nidulans]
Length = 725
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +3
Query: 45 YLPNHSDKMTIGKNNKMQQH 104
YL +HSDK + G++NK++Q+
Sbjct: 157 YLYHHSDKPSGGQSNKIRQN 176
>At1g17400.1 68414.m02124 hypothetical protein
Length = 310
Score = 25.8 bits (54), Expect = 9.6
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 171 DKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFV 278
++ +N+ILG C+E I+SKN+K K ++ ++
Sbjct: 165 ERTINVILGRCKEI-SIESKNNKKKRDISKNSVSYL 199
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,193,927
Number of Sequences: 28952
Number of extensions: 122013
Number of successful extensions: 462
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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