Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0192
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)               31   1.2  
SB_8135| Best HMM Match : GBP_PSP (HMM E-Value=0.64)                   30   2.0  
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)            30   2.0  
SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_15232| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_17357| Best HMM Match : IMS (HMM E-Value=0)                         29   4.7  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         28   8.3  
SB_55297| Best HMM Match : Drf_FH1 (HMM E-Value=0.74)                  28   8.3  
SB_31893| Best HMM Match : I-set (HMM E-Value=2e-22)                   28   8.3  
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)                    28   8.3  
SB_8102| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  

>SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)
          Length = 321

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +3

Query: 387 GTNVIDIRVGSGPCSSYIDVCCLAPDQRPPTDPITPRPETLP-MNQGC 527
           G N   +     P   Y+ V    P  +PP  P TP+P   P +  GC
Sbjct: 195 GMNPSQLAQSVVPAPQYVHVPPATPTPKPPPTPKTPKPGAAPKIKNGC 242


>SB_8135| Best HMM Match : GBP_PSP (HMM E-Value=0.64)
          Length = 225

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 162 TGDLESIINQIFTSAKPPTQLQPVTQPSVADRAPSTLV 275
           TG +   +NQ+ T+ +P T  +PV +  + D  P+ L+
Sbjct: 118 TGMVPYTVNQVMTTGRPRTTTRPVQRQDLPDSDPAPLL 155


>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
          Length = 308

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +3

Query: 378 ITDGTNVIDIRVGSGPCSSYIDVCCLAPDQRPPTDPITPRPETLPMNQGCGWR 536
           +T G   I  R G G   +++D+C      R   D      E +    GCG R
Sbjct: 60  VTFGHGWISARQGEGHVQTWMDICKTGRRSRSDMDGYLQEREKVTFRHGCGQR 112


>SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +3

Query: 111  KLLFIGFLASACAQNMDTGDLESIINQIFTSAKPPTQLQPVTQPSVADRA 260
            K + +G + S  +Q  DT  L++  NQ+ TS K PT+ Q + Q    +RA
Sbjct: 1024 KFVSVGRMRSLFSQ-ADTKVLQAACNQLITSKKAPTRSQILRQIRSDERA 1072


>SB_15232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +3

Query: 111 KLLFIGFLASACAQNMDTGDLESIINQIFTSAKPPTQLQPVTQPSVADRA 260
           K + +G + S  +Q  DT  L++  NQ+ TS K PT+ Q + Q    +RA
Sbjct: 58  KFVSVGRMRSLFSQ-ADTEVLQAACNQLITSKKAPTRSQILRQIRSDERA 106


>SB_17357| Best HMM Match : IMS (HMM E-Value=0)
          Length = 990

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
 Frame = +3

Query: 333 ECVNYYLCNAANNTIITDGTNVIDIRVGSGPCSSYIDV--CCLAPDQRPPTDPITPRPET 506
           +C++  LCN+    I  D +N         P S  +D   C   PD  PP    TP P  
Sbjct: 694 QCIDNSLCNS----IAGDVSNRQSRDEEKAPLSPDVDKMQCFSPPDSLPPLPKFTPSPTG 749

Query: 507 LPMNQG 524
            P   G
Sbjct: 750 YPCRTG 755


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = +3

Query: 531  WRNPDG---VAFRTTGDVDGETKFGEFPWMVAILKVEPVDDNEP 653
            WR  +G   VA  T GD+  E +    PW+V   +    D NEP
Sbjct: 4088 WRFNEGEGAVAIDTVGDI--EMELASSPWLVPSWEFSDADMNEP 4129


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +3

Query: 459  PDQRPPTDPITPRPETLPM-NQGCGWRNPDGVAFRTTGDVDGETKFGEFPWMVAILKVEP 635
            P  +P T PITP P+  P  +     R    + F   G +D         W+    +  P
Sbjct: 1037 PTGKPTTKPITPGPDGSPNGSYRFNGRRNSYIVFPNRGRLDTRNSITLIAWVNPEGRDGP 1096

Query: 636  VDDNEPEGQKLNVYV 680
            V +  P G  +++++
Sbjct: 1097 VFNYNPAGFGVHMWI 1111


>SB_55297| Best HMM Match : Drf_FH1 (HMM E-Value=0.74)
          Length = 808

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 153 NMDTGDLESIINQIFTSAKPPTQLQPVTQPSVADRAP 263
           N  T +LES IN++  +  PP Q   ++ P  +D  P
Sbjct: 184 NFGTNNLESAINEVVPALTPP-QTNIISVPGKSDNKP 219


>SB_31893| Best HMM Match : I-set (HMM E-Value=2e-22)
          Length = 767

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +3

Query: 117 LFIGFLASACAQNMDTGDLESIINQIFTSAKPPTQLQPVTQPSVADRAPSTLVPGVSTND 296
           +F   L  + AQ  D+G           SA+  T +   T+P   ++ PS +    ST+ 
Sbjct: 368 IFSSTLGFSKAQPEDSGTWVFNAKNAMGSARAATDIIVATKPKFIEKPPSKVTAFQSTST 427

Query: 297 DLSCQ 311
            L C+
Sbjct: 428 KLECK 432


>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3255

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 392  CSVSDNGVIGRIAQVIVDALPFLAVGGLARKVIVRR 285
            C+VS+N V+G I   ++   P L  GG+    I+ R
Sbjct: 1903 CNVSENAVVGAIIAELLAVDPDLGTGGVVSYRILTR 1938


>SB_8102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 690

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 11  SRTRKILKPVTSRRALRVRYC*CDVLRIISKDVQASIHRLSRV 139
           S+T+K  +PV+ R++        DV R++  D   ++HR + V
Sbjct: 388 SKTQKNAEPVSERQSASRSTARADVKRLLETDTHVAMHRDTHV 430


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,938,361
Number of Sequences: 59808
Number of extensions: 434987
Number of successful extensions: 1447
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)