Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0190
         (780 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                206   2e-53
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)             31   1.0  
SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41)                   29   5.6  
SB_12157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              28   9.8  
SB_2876| Best HMM Match : Peptidase_C2 (HMM E-Value=2.8)               28   9.8  

>SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 475

 Score =  206 bits (503), Expect = 2e-53
 Identities = 92/125 (73%), Positives = 110/125 (88%)
 Frame = +1

Query: 40  VQLVGKASLAETDKITLEVAKLLKDDFLQQNSYSSYDRFCPFYKTVGMLKNIITFYDMSR 219
           VQLVGK SLAE+DKITLEVAKL+KDDFLQQN Y+ YD+FCPFYKTVGML NI+ FYDM+R
Sbjct: 351 VQLVGKGSLAESDKITLEVAKLIKDDFLQQNGYTPYDKFCPFYKTVGMLSNIVAFYDMAR 410

Query: 220 HAVESTAQSDNKVTWNVIRDAMGNVLYQLSSMKFKDPVKDGEPKIKADFDQLLEDMSAAF 399
           H+VE+TAQ++NKVTWNVI++ MG+ +Y LSSMKFKDP+KDGE KIKADF +L E +   F
Sbjct: 411 HSVETTAQAENKVTWNVIKENMGDAIYALSSMKFKDPIKDGEAKIKADFAELHEQLQQGF 470

Query: 400 RNLED 414
           R+LED
Sbjct: 471 RSLED 475


>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
          Length = 761

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 5   RSCRRKRTCPKSCSWS-ARRPSRKLTRSRSRSPSCSKTTS 121
           RS  R R+  +S SWS  R  SR  TRSRSRS + S++ S
Sbjct: 417 RSRIRSRSPARSRSWSHTRSRSRSHTRSRSRSHTRSRSRS 456


>SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41)
          Length = 487

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 3   GDPAGGRGPVRNRAAGRQGVPRGN*QDHARG 95
           G P  G GP+R    G +G PRG      RG
Sbjct: 198 GGPGFGGGPMRGGPMGGRGGPRGRGMQRGRG 228


>SB_12157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 5   RSCRRKRTCPKSCSWSARRPSRKLTRSRSRSPSCSKTTSC 124
           +SC R R   ++C+ +     RK  + ++ SP  S+T  C
Sbjct: 141 KSCGRGRGVVRNCTHNHNTVCRKCEKEKTYSPGKSRTDGC 180


>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2532

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +1

Query: 112  DDFLQQNSYSSYDRFCP--FYKT-VGMLKNIITFYDMSRHAVESTAQSDN 252
            DD L +NS   Y  FCP   Y T V ++K++I    +S   ++S +  DN
Sbjct: 864  DDLLSRNSSIRYFVFCPNNKYTTWVTLVKSLIDNSTLSTFHIQSPSIDDN 913


>SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 752

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 135 LFVVRSLLPVLQDGGHAEEHHHVLRHVAARGGVHGAVRQQGHVERHPR 278
           +F   ++LP   +GG   E   ++R V+ +GGV    R+   V   PR
Sbjct: 109 IFAAIAMLPTGSEGGWFGEE--IVRAVSEKGGVRERPRESERVRESPR 154


>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 70   PRGTPCRPAARFRTGPLPPAGSP 2
            P G P +P A  +  PLPP G P
Sbjct: 2629 PPGLPMQPEAPVQPPPLPPPGGP 2651


>SB_2876| Best HMM Match : Peptidase_C2 (HMM E-Value=2.8)
          Length = 947

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 249 VGLRRGLHRVPRHVVERDDVLQHAHR 172
           + LRR L R+PR  V R+D L H HR
Sbjct: 598 IALRRMLRRIPREDVLRND-LAHDHR 622


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,071,641
Number of Sequences: 59808
Number of extensions: 450676
Number of successful extensions: 1372
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)