Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0190
         (780 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit...   138   3e-33
At1g16820.1 68414.m02021 vacuolar ATP synthase catalytic subunit...    42   5e-04
At1g67870.1 68414.m07750 glycine-rich protein contains non-conse...    34   0.12 
At4g28190.1 68417.m04041 expressed protein                             32   0.49 
At2g20825.1 68415.m02452 expressed protein                             32   0.49 
At1g48405.1 68414.m05407 hypothetical protein                          31   1.1  
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar...    29   4.6  
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    29   4.6  
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    29   4.6  
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR...    28   8.0  
At3g21790.1 68416.m02748 UDP-glucoronosyl/UDP-glucosyl transfera...    28   8.0  

>At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit A
           / V-ATPase A subunit / vacuolar proton pump alpha
           subunit / V-ATPase 69 kDa subunit identical to SP|O23654
           Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)
           (V-ATPase A subunit) (Vacuolar proton pump alpha
           subunit) (V-ATPase 69 kDa subunit) {Arabidopsis
           thaliana}
          Length = 623

 Score =  138 bits (335), Expect = 3e-33
 Identities = 66/128 (51%), Positives = 95/128 (74%), Gaps = 1/128 (0%)
 Frame = +1

Query: 40  VQLVGKASLAETDKITLEVAKLLKDDFLQQNSYSSYDRFCPFYKTVGMLKNIITFYDMSR 219
           VQLVGK +LAE DKITLE AKLL++D+L QN+++ YD+FCPFYK+V M++NII FY+++ 
Sbjct: 496 VQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLAN 555

Query: 220 HAVESTAQSD-NKVTWNVIRDAMGNVLYQLSSMKFKDPVKDGEPKIKADFDQLLEDMSAA 396
            AVE  A  D  K+T+ +I+  +G++ Y+L S KF+DP  +GE  +   F +L +D++A 
Sbjct: 556 QAVERAAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPA-EGEDTLVEKFKKLYDDLNAG 614

Query: 397 FRNLED*T 420
           FR LED T
Sbjct: 615 FRALEDET 622


>At1g16820.1 68414.m02021 vacuolar ATP synthase catalytic
           subunit-related / V-ATPase-related / vacuolar proton
           pump-related similar to Vacuolar ATP synthase catalytic
           subunit A (V-ATPase A subunit) (Vacuolar proton pump
           alpha subunit) (V-ATPase 69 kDa subunit) (SP:O23654)
           [Arabidopsis thaliana]
          Length = 93

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 16/37 (43%), Positives = 27/37 (72%)
 Frame = +1

Query: 139 SSYDRFCPFYKTVGMLKNIITFYDMSRHAVESTAQSD 249
           ++YD+F P YK+V M++NII FY+++  A++  A  D
Sbjct: 32  TNYDKFSPSYKSVWMMRNIIHFYNLANQAIDRAAGVD 68


>At1g67870.1 68414.m07750 glycine-rich protein contains
           non-consensus GG donor splice site at exon2; modeled to
           est match.
          Length = 279

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
 Frame = +3

Query: 174 GGHAEEHH--HVLRHVAARG----GVHGAVRQQGHVERHPRRHGQR 293
           GGH  +HH  H ++H    G    G+HG   Q GH  +H   HG +
Sbjct: 132 GGHGIQHHDIHGMQHQGGHGMQHQGMHGMQHQGGHGMQHQGGHGMQ 177



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
 Frame = +3

Query: 174 GGHAEEHH--HVLRHVAARG----GVHGAVRQQGHVERHPRRHGQR 293
           GGH  EH   H ++H    G    G HG   Q GH  +H   HG +
Sbjct: 188 GGHGMEHQGGHGMQHQDMHGMQHQGRHGMQHQGGHEMQHQGMHGMQ 233



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
 Frame = +3

Query: 174 GGHAEEHH--HVLRHVAARG----GVHGAVRQQGHVERHPRRHGQR 293
           GGH  +H   H ++H    G    G HG   Q GH  +H   HG +
Sbjct: 164 GGHGMQHQGGHGMQHQGMHGMQHQGGHGMEHQGGHGMQHQDMHGMQ 209



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 174 GGHAEEHHHVLRHVAARGGVHGAVRQQGHVERHPRRHGQR 293
           GGH  +H  +  H     G HG   Q GH  +H   HG +
Sbjct: 148 GGHGMQHQGM--HGMQHQGGHGMQHQGGHGMQHQGMHGMQ 185


>At4g28190.1 68417.m04041 expressed protein
          Length = 237

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 38  SCSWSARRPSRKLTRSRSRSPSCSKTTSC 124
           +C     R SRK+ R  +RSPSC   TSC
Sbjct: 182 TCEEEEERGSRKVYRGCTRSPSCKGCTSC 210


>At2g20825.1 68415.m02452 expressed protein
          Length = 228

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 38  SCSWSARRPSRKLTRSRSRSPSCSKTTSC 124
           +C     R SRK+ R  +RSPSC   TSC
Sbjct: 172 TCEEEEERGSRKVFRGCTRSPSCKGCTSC 200


>At1g48405.1 68414.m05407 hypothetical protein
          Length = 297

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 169 KTVGMLKNIITFYDMSRH-AVESTAQSDNKVT 261
           KT+G+LK ++   DM +  AVE TA   +K+T
Sbjct: 145 KTIGLLKKLVMLLDMEKEVAVEETANLGHKLT 176


>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
            RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF00397:
            WW domain
          Length = 1088

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 2    RRSCRRKRTCPKSCSWS-ARRPSRKLTRSRSRSPSCSK 112
            RRS    R+  +S S+S +R  SR  +RSRSRSP  S+
Sbjct: 966  RRSSSYSRSRSRSGSYSRSRSRSRSWSRSRSRSPRHSR 1003


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 38  SCSWSARRPSRKLTRSRSRSPSCSKTTS 121
           S S S   PSR ++RSRSRS S S ++S
Sbjct: 22  SRSRSGSSPSRSISRSRSRSRSLSSSSS 49



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 14  RRKRTCPKSCSWSARRPSRKLTRSRS-RSPSCSKTTSCN 127
           RR R+   S S S RR  RK++RSRS + P   K +S N
Sbjct: 353 RRGRSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSN 391


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 38  SCSWSARRPSRKLTRSRSRSPSCSKTTS 121
           S S S   PSR ++RSRSRS S S ++S
Sbjct: 22  SRSRSGSSPSRSISRSRSRSRSLSSSSS 49



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 14  RRKRTCPKSCSWSARRPSRKLTRSRS-RSPSCSKTTSCN 127
           RR R+   S S S RR  RK++RSRS + P   K +S N
Sbjct: 360 RRGRSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSN 398


>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
           protein, putative strong similarity to SP|O22315
           Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
           thaliana}; cDNA NCBI_gi:15810292 supports a truncated
           version while protein evidence supports a longer model.
          Length = 278

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/35 (54%), Positives = 21/35 (60%)
 Frame = +2

Query: 5   RSCRRKRTCPKSCSWSARRPSRKLTRSRSRSPSCS 109
           RS  R R+  KS S   R PSR  +RSRSRS S S
Sbjct: 200 RSPSRGRSYSKSRS-RGRSPSRSRSRSRSRSKSRS 233


>At3g21790.1 68416.m02748 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 495

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/53 (28%), Positives = 34/53 (64%)
 Frame = +1

Query: 235 TAQSDNKVTWNVIRDAMGNVLYQLSSMKFKDPVKDGEPKIKADFDQLLEDMSA 393
           +A S+N++ + VI  A+     ++++++    +K+ EPK+++   +LLED S+
Sbjct: 58  SASSNNRLRYEVI-SAVDQPTIEMTTIEIH--MKNQEPKVRSTVAKLLEDYSS 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,030,560
Number of Sequences: 28952
Number of extensions: 297959
Number of successful extensions: 900
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)