Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0184
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    28   1.2  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    27   2.8  
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc...    26   6.5  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    25   8.6  

>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 637 LSFPNTFFGR-VIGVPNSVTKSGLIPGRIIFVILALRFDCTFYFL 506
           ++  NT  G  ++ +PN+ TK+GL+ G +  V  A       YF+
Sbjct: 26  INLANTILGAGILSLPNAFTKTGLLFGCLTIVFSAFASFLGLYFV 70


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 1   QNFLEYFDISIESVYSKTDFD 63
           Q+F+E  D+ ++  +SK DFD
Sbjct: 650 QHFIELIDLHVQDEFSKEDFD 670


>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = +2

Query: 587 RVRDANNSTKKRIGKG*L*FLCGNGIW*II 676
           RV D+ NST   IG+G    L  NGIW II
Sbjct: 97  RVVDSVNSTLNNIGRG---RLSVNGIWEII 123


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/39 (23%), Positives = 25/39 (64%)
 Frame = +1

Query: 25  ISIESVYSKTDFDNDYKKKLDYGLIVTILYCPFMFVDEN 141
           I +  + +KT+F +++    D+G ++ + +CP + V+++
Sbjct: 249 IQLWKLENKTNFKSEFILYHDWGSVLQLEWCPTISVEDS 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,697
Number of Sequences: 5004
Number of extensions: 66402
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)