Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0184
(740 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21647| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_54489| Best HMM Match : Aa_trans (HMM E-Value=0.02) 30 1.7
SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 30 1.7
SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_18750| Best HMM Match : Rotavirus_VP7 (HMM E-Value=4.8) 30 1.7
SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20) 30 2.3
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10) 29 5.2
SB_48543| Best HMM Match : Exo_endo_phos (HMM E-Value=7.8e-06) 28 6.9
SB_58162| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-14) 28 6.9
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20) 28 9.1
>SB_21647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 33.1 bits (72), Expect = 0.24
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = -1
Query: 647 ETKV-ILSQYVFWSSYWRP*LCHKVRFDSRSDYLCNISVAV*LYILFSCMY 498
+T+V + S +++ S P + KV + S + NI++AV L+ LFSC+Y
Sbjct: 137 QTRVSVASTFIWVLSLSLPSIYLKVGYTSYAFVFANITIAVTLFFLFSCLY 187
>SB_54489| Best HMM Match : Aa_trans (HMM E-Value=0.02)
Length = 385
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 607 VIGVPNSVTKSGLIPGRIIFVILALRFDCTFYFLVCISDTQN 482
++ +P+S+ K+G+I G I I+A + FL+ + T N
Sbjct: 30 ILALPSSIAKAGIISGSICLTIVAFMAFVSATFLIEVLSTAN 71
>SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 1131
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 733 YTSKQNLDLHLFGYTRTTDNYSP 665
Y+S+ +DLH YT+TT +SP
Sbjct: 639 YSSRPAMDLHTASYTKTTPTFSP 661
>SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2484
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 733 YTSKQNLDLHLFGYTRTTDNYSP 665
Y+S+ +DLH YT+TT +SP
Sbjct: 90 YSSRPAMDLHTASYTKTTPTFSP 112
>SB_18750| Best HMM Match : Rotavirus_VP7 (HMM E-Value=4.8)
Length = 264
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 733 YTSKQNLDLHLFGYTRTTDNYSP 665
Y+S+ +DLH YT+TT +SP
Sbjct: 110 YSSRPAMDLHTASYTKTTPTFSP 132
>SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -2
Query: 733 YTSKQNLDLHLFGYTRTTDNYSPNTITTKKLKLSFPNTF 617
Y+S+ +DLH YT+TT +S ++ + + ++ N F
Sbjct: 110 YSSRPAMDLHTASYTKTTPTFSRESLYSIRRQMRTRNLF 148
>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
Length = 1285
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -2
Query: 733 YTSKQNLDLHLFGYTRTTDNYSPNTITTKKLKLSFPNTF 617
Y+S+ +DLH YT+TT +S ++ + + ++ N F
Sbjct: 524 YSSRPAMDLHTASYTKTTPRFSRESLYSIRRQMRTRNLF 562
>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
Length = 333
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -2
Query: 709 LHLFGYTRTTDNYSPNTITTKKLKLSFPNTFFGRVIGVPNSVTKSGLIPG 560
+ + G ++D PN I T ++ +P + G NS+ + GL PG
Sbjct: 195 IKVLGRYESSDWLGPNGIRTSQVPREWPVAYHGTNFTNANSILQKGLKPG 244
>SB_48543| Best HMM Match : Exo_endo_phos (HMM E-Value=7.8e-06)
Length = 768
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -2
Query: 733 YTSKQNLDLHLFGYTRTTDNYSPNTITTKKLKLSFPNTF 617
Y+S+ +DLH YT+TT S +++ + + ++ N F
Sbjct: 95 YSSRPAMDLHTASYTKTTPTSSGDSLYSIRRQMRTRNLF 133
>SB_58162| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-14)
Length = 624
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = -2
Query: 733 YTSKQNLDLHLFGYTRTTDNYSPNTITTKKLKLSFPNTF 617
++S+ +DLH YT+TT +S ++ + + ++ N F
Sbjct: 82 HSSRPAMDLHTASYTKTTPTFSRESLYSIRRRMRTRNLF 120
>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -1
Query: 545 NISVAV*LYILFSCMY 498
NIS+AV L+ LFSC+Y
Sbjct: 541 NISIAVSLFFLFSCLY 556
>SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)
Length = 672
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -2
Query: 733 YTSKQNLDLHLFGYTRTTDNYSPNTITTKKLKLSFPNTF 617
Y+S+ +DLH Y +TT +S ++ + + ++ N F
Sbjct: 145 YSSRPAMDLHTASYNKTTPTFSRESLYSIRRQMRTRNLF 183
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,573,449
Number of Sequences: 59808
Number of extensions: 441964
Number of successful extensions: 894
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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