Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0184
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   2.3  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   7.0  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   7.0  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   7.0  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   7.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.0  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 31  IESVYSKTDFDNDYKKKLDYGLI 99
           I S+ + T  +N+Y KKL Y +I
Sbjct: 315 ISSLSNNTIHNNNYNKKLYYNII 337


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 34  ESVYSKTDFDNDYKKKLDYGL 96
           E + +K D   +YKK+ ++GL
Sbjct: 99  ERLSAKYDSTGEYKKRYEHGL 119


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = -2

Query: 142 RSRPQT*RGNTKW*QLNRNQVFSYNHYRNLF*NTRIL*KYQNIQE 8
           RSR +T R  +K  ++  +  ++Y +Y N + + ++     NI++
Sbjct: 288 RSRDRTERERSKETKIISSNNYNYKNYNNNYNSKKLYYNIINIEQ 332


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = -2

Query: 142 RSRPQT*RGNTKW*QLNRNQVFSYNHYRNLF*NTRIL*KYQNIQE 8
           RSR +T R  +K  ++  +  ++Y +Y N + + ++     NI++
Sbjct: 299 RSRDRTERERSKETKIISSNNYNYKNYNNNYNSKKLYYNIINIEQ 343


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 34  ESVYSKTDFDNDYKKKLDYGL 96
           E + +K D   +YKK+ ++GL
Sbjct: 99  ERLSAKYDSTGEYKKRYEHGL 119


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 447  KNRNFE*IFLPTFWVSEIHTRK*NVQSNRNA 539
            +NR  E IF  T   +E+H R      NR A
Sbjct: 1110 ENRYHEDIFGITLRTAEVHNRSRETARNRMA 1140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,679
Number of Sequences: 438
Number of extensions: 4985
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)