Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0183
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09)                 33   0.19 
SB_38076| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)                 28   9.5  

>SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09)
          Length = 765

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = -1

Query: 764 PRHVCQDQRIQIR--LSVHVRTSEIEYPEPGQQNFAYISAIYVKDHYTDGNGGYPIVK-S 594
           PRH    + +  +  L+V +R+S  E P PGQ   + +S+  VKD     N G  +   S
Sbjct: 480 PRHRSSPRCVTNKTPLAVQLRSSSTETPHPGQSKPSLLSSQLVKDPPQSANTGKIMQSLS 539

Query: 593 GGVGQKFVKLKLKSQRG 543
           G + Q  +   LKS +G
Sbjct: 540 GFIVQASLHACLKSVKG 556


>SB_38076| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)
          Length = 577

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 303 INTFNIFIPYLVSCVI 256
           +N FNIF+ YL++C +
Sbjct: 152 VNVFNIFVKYLIACTL 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,082,550
Number of Sequences: 59808
Number of extensions: 367413
Number of successful extensions: 636
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)