Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0182
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    28   0.11 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   0.98 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   0.98 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   0.98 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.1  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +1

Query: 199 SYEWKDELFGCDFLAAPVSLFKHAPLHEMWDNTFEGMKVEVKNTDCDNYSEKLSDYF 369
           +++WKD LFG    A     +K    H M       +  EV     D+  EK +DY+
Sbjct: 232 NFQWKDGLFGLSLSALQTDGYKILYFHAMSSIAEFSVSTEVLQ---DHTLEKSNDYY 285



 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 289 DNTFEGMKVEVKNTDCDNYSEKLSDYFWVATVL 387
           D+ F  + ++V   +CDN    +SD    A V+
Sbjct: 169 DSFFVDLVIDVDPNNCDNTYAYISDLSGYALVV 201


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 372 PKVITKFFRIIITVCILHFNL 310
           P  I K+ RI+  VC + FNL
Sbjct: 401 PSDIDKYSRIVFPVCFVCFNL 421


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 372 PKVITKFFRIIITVCILHFNL 310
           P  I K+ RI+  VC + FNL
Sbjct: 401 PSDIDKYSRIVFPVCFVCFNL 421


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 372 PKVITKFFRIIITVCILHFNL 310
           P  I K+ RI+  VC + FNL
Sbjct: 339 PSDIDKYSRIVFPVCFVCFNL 359


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 538 EDKYTDWKKFLVKQLTGARTL 600
           +D Y  WK + +K LT A  L
Sbjct: 6   DDSYDFWKNWDLKNLTEAEYL 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,139
Number of Sequences: 438
Number of extensions: 4875
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)