Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0182
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16690.1 68418.m01954 origin recognition complex subunit 3-re...    30   1.8  
At1g51530.1 68414.m05800 RNA recognition motif (RRM)-containing ...    29   4.3  
At4g14950.3 68417.m02297 expressed protein                             27   9.8  
At4g14950.1 68417.m02296 expressed protein                             27   9.8  
At3g14190.1 68416.m01793 expressed protein                             27   9.8  
At2g34100.1 68415.m04175 expressed protein  similar to the Asp-r...    27   9.8  
At1g24100.1 68414.m03041 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.8  

>At5g16690.1 68418.m01954 origin recognition complex subunit
           3-related / ORC3-related low similarity to SP|Q9UBD5
           Origin recognition complex subunit 3 (Origin recognition
           complex subunit Latheo) {Homo sapiens}
          Length = 556

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -2

Query: 363 ITKFFRIIITVCILHFNLHALKCVIPHF----MKRCMFE 259
           +T F R +   C+ HF+L  L  ++ HF    + +C++E
Sbjct: 336 LTSFVRTLKIACLQHFSLEPLSIMLEHFCHDGVNQCLYE 374


>At1g51530.1 68414.m05800 RNA recognition motif (RRM)-containing
           protein
          Length = 391

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -3

Query: 548 YLSSIVRGGMSGLPRVAHQPTG*TSEQHRFTQKSLESSLPNPSY 417
           +  S VR G SG      +    ++E+H+  +KSLE++LP+ S+
Sbjct: 320 HFPSQVREGGSGTGEKDLEQVETSNEEHQGQEKSLENTLPDSSF 363


>At4g14950.3 68417.m02297 expressed protein
          Length = 406

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/48 (25%), Positives = 27/48 (56%)
 Frame = -3

Query: 521 MSGLPRVAHQPTG*TSEQHRFTQKSLESSLPNPSYLRSPM*PFTFKTV 378
           +S +P +A    G T++ H   +K +++  P PS+++     F+F ++
Sbjct: 319 LSHVPGLASMLPGLTAKLHAMKEKYIDAPSPVPSHIKVKKWDFSFASI 366


>At4g14950.1 68417.m02296 expressed protein
          Length = 416

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/48 (25%), Positives = 27/48 (56%)
 Frame = -3

Query: 521 MSGLPRVAHQPTG*TSEQHRFTQKSLESSLPNPSYLRSPM*PFTFKTV 378
           +S +P +A    G T++ H   +K +++  P PS+++     F+F ++
Sbjct: 329 LSHVPGLASMLPGLTAKLHAMKEKYIDAPSPVPSHIKVKKWDFSFASI 376


>At3g14190.1 68416.m01793 expressed protein
          Length = 193

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +1

Query: 22  NASFSRRKHINWRFKLMEGTDHMAGMIPLE-PLPQLQQWHATLSDLQAGPIKQSAASVAN 198
           + S  + KH+NW  + M+  D +    P E   P+   W    +  ++ PI+  +   + 
Sbjct: 114 HGSSIKEKHLNWDIEKMDAKDDLTYEEPEEMASPKFSDWLKNSTPWRS-PIRHGSMMPST 172

Query: 199 SYEWKDELFGCDF 237
              W+ +   C+F
Sbjct: 173 PLAWRFD--SCEF 183


>At2g34100.1 68415.m04175 expressed protein  similar to the Asp-rich
           region of GP|1633572|U52064
          Length = 345

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
 Frame = +1

Query: 124 LQQWHATLSDLQAGPIKQSAASVANSYEWKDELFGCDFLAAPVSLFKHAPLHEMWDNTFE 303
           +Q W+  LSD++  P++  +  +A   E   + +       P S F  A   +  D+ +E
Sbjct: 78  IQHWYMCLSDVKEKPLQHWSMCIAEVKEKPSQHWAMRASKFPES-FTQA---QGGDDCYE 133

Query: 304 GMKVEVKNTDCDNYSEKLSD--YFWVATVLKVK-GYMGLLRYEGFGSDDSKD 450
                    D D+Y E+ S+    W      +K GY+     E   +DD +D
Sbjct: 134 NYGDGADGIDDDDYDEENSESSLKWNCDYQLLKSGYLSFDEEEEEDNDDEED 185


>At1g24100.1 68414.m03041 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 460

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 277 HEMWDNTFEGMKVEVKNTDCDNYSEKLSDYFWVATVLKVKGY 402
           H  W++T EG+ + V       +S++++D  +V  V KV GY
Sbjct: 354 HCGWNSTLEGLSLGVPMVGVPQWSDQMNDAKFVEEVWKV-GY 394


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,882,006
Number of Sequences: 28952
Number of extensions: 372013
Number of successful extensions: 947
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)