Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0179
(599 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 190 2e-49
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 109 2e-25
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 108 5e-25
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 97 1e-21
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 90 2e-19
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 87 1e-18
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 73 3e-14
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 72 7e-14
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 68 9e-13
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 58 7e-10
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 57 2e-09
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 45 1e-05
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 44 2e-05
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 41 1e-04
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 40 2e-04
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 40 4e-04
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 39 6e-04
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 30 0.30
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 27 2.1
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ... 26 3.7
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb... 26 4.8
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 8.5
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 8.5
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 190 bits (462), Expect = 2e-49
Identities = 94/152 (61%), Positives = 118/152 (77%), Gaps = 5/152 (3%)
Frame = +1
Query: 4 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQNILIMLVGNK 183
DTAGQERYRAITSAYYRGAVGAL+VYDI K S++NV RWL+ELR+HAD NI+IMLVGNK
Sbjct: 65 DTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNK 124
Query: 184 SDLRHLRSIPTEEAKAFAEANGLSFIETSALDSTNVEPAFQNILTEIYRIVSQRQMRDPP 363
+DL HLR++ TEEA+AFA N LSFIETSA+D++NVE AFQ +LTEI+RIVS R +
Sbjct: 125 TDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGD 184
Query: 364 EGDVIRPDA-EPADVRPSQADSVRR----QCC 444
+G + P A + ++ P+ D ++ QCC
Sbjct: 185 DG--VHPTAGQTLNIAPTMNDLNKKKSSSQCC 214
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 109 bits (263), Expect = 2e-25
Identities = 52/107 (48%), Positives = 75/107 (70%)
Frame = +1
Query: 4 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQNILIMLVGNK 183
DTAGQER+R ITS+YYRGA G ++VYD+ S+ NV++WL+E+ +A + + +LVGNK
Sbjct: 63 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNK 122
Query: 184 SDLRHLRSIPTEEAKAFAEANGLSFIETSALDSTNVEPAFQNILTEI 324
SD+ + + AK FA++ + F+ETSA DSTNVE AF + +I
Sbjct: 123 SDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQI 169
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 108 bits (260), Expect = 5e-25
Identities = 48/107 (44%), Positives = 69/107 (64%)
Frame = +1
Query: 4 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQNILIMLVGNK 183
DTAGQER+R IT+AYYRGA+G LL+YD+ S++NV W + HA +N+ +L+GNK
Sbjct: 64 DTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNK 123
Query: 184 SDLRHLRSIPTEEAKAFAEANGLSFIETSALDSTNVEPAFQNILTEI 324
D R + E+ +A A+ G+ F+E SA + NV+ AF + EI
Sbjct: 124 CDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREI 170
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 97.5 bits (232), Expect = 1e-21
Identities = 46/108 (42%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Frame = +1
Query: 4 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQNILIMLVGNK 183
DTAGQE++R++ YYRGA GA+LVYD+ S+E + WL ++R A I ++L G+K
Sbjct: 68 DTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGSK 127
Query: 184 SDLRHLRSIPTEEAKAFAEANGLSFI-ETSALDSTNVEPAFQNILTEI 324
SDL++ R + TEEA F +S ETS+ +NVE F ++++ I
Sbjct: 128 SDLQNQRQVSTEEAAEFCSEKHISSAHETSSYTGSNVEECFLSVVSTI 175
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 90.2 bits (214), Expect = 2e-19
Identities = 53/138 (38%), Positives = 76/138 (55%), Gaps = 1/138 (0%)
Frame = +1
Query: 4 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQNILIMLVGNK 183
DTAGQERY+++ YYR A A++VYDI + S E + W++EL+ A + I+I L GNK
Sbjct: 70 DTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNK 129
Query: 184 SDL-RHLRSIPTEEAKAFAEANGLSFIETSALDSTNVEPAFQNILTEIYRIVSQRQMRDP 360
DL + R++ +A+A+A L F ETSA + NV F I ++ Q R
Sbjct: 130 LDLAQERRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKLPLEDKLNQARGA 189
Query: 361 PEGDVIRPDAEPADVRPS 414
V +A PA +PS
Sbjct: 190 VNRGVNLSEARPA-AQPS 206
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 87.4 bits (207), Expect = 1e-18
Identities = 41/103 (39%), Positives = 65/103 (63%)
Frame = +1
Query: 4 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQNILIMLVGNK 183
DTAGQER+R++ +Y R + A++VYDI H S+ N E+W+ ++R +++I+LVGNK
Sbjct: 66 DTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNK 125
Query: 184 SDLRHLRSIPTEEAKAFAEANGLSFIETSALDSTNVEPAFQNI 312
+DL R + EE + A+ + +ETSA NV+ F+ I
Sbjct: 126 TDLADKRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKI 168
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 72.9 bits (171), Expect = 3e-14
Identities = 40/109 (36%), Positives = 64/109 (58%), Gaps = 6/109 (5%)
Frame = +1
Query: 4 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHAD----QNILIML 171
DTAGQER++++ A+YRGA +LVYD+ S+E ++ W E A + +L
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFIL 122
Query: 172 VGNKSDL-RHLRSIPTEEAKAFAEANG-LSFIETSALDSTNVEPAFQNI 312
+GNK D+ R + +A AF +A G + + ETSA ++ NV+ AF+ +
Sbjct: 123 LGNKVDVEEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETV 171
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 71.7 bits (168), Expect = 7e-14
Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Frame = +1
Query: 4 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQN-ILIMLVGN 180
DTAGQ+ Y + S + G G +LVY I S+E V+ ++ +H + I++VGN
Sbjct: 60 DTAGQDEYSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGN 119
Query: 181 KSDLRHLRSIPTEEAKAFAEANGLSFIETSALDSTNVEPAFQNILTEIYRIVSQRQMRDP 360
KSDL R++ EE KA A ++ E SA + NV AF+ I++EI ++Q
Sbjct: 120 KSDLHMQRAVTAEEGKALANEWKCAWTEASARHNENVARAFELIISEI-----EKQANPS 174
Query: 361 PEGD 372
P GD
Sbjct: 175 PPGD 178
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 68.1 bits (159), Expect = 9e-13
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Frame = +1
Query: 4 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQNIL-IMLVGN 180
DTAGQE Y A+ Y R G LLVY+I S++ + + +++ D++ ++LV N
Sbjct: 62 DTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVAN 121
Query: 181 KSDLRHLRSIPTEEAKAFAEANGLSFIETSALDSTNVEPAFQNILTEIYR 330
K DL R + E + A++ ++ETSA NVE AF +++ I R
Sbjct: 122 KCDLEAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTIRR 171
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 58.4 bits (135), Expect = 7e-10
Identities = 35/110 (31%), Positives = 63/110 (57%), Gaps = 7/110 (6%)
Frame = +1
Query: 4 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQN---ILIMLV 174
DTAGQER++++ A+YRGA ++VY++ S+++VE W +E Q+ ++V
Sbjct: 63 DTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIV 122
Query: 175 GNKSDL-RHLRSIPTEEAKAFAEA-NGLSFI--ETSALDSTNVEPAFQNI 312
GN+ D R++ A + ++ +G + I E SA ++TNV F+ +
Sbjct: 123 GNQIDKDASKRAVSLHRALDYCKSKHGSNMIHFEASAKENTNVTDLFETV 172
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 57.2 bits (132), Expect = 2e-09
Identities = 32/100 (32%), Positives = 52/100 (52%)
Frame = +1
Query: 4 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQNILIMLVGNK 183
DTAGQE+ + YY ++++D+ ++Y+NV W R+L +NI I+L GNK
Sbjct: 64 DTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDL-VRVCENIPIVLCGNK 122
Query: 184 SDLRHLRSIPTEEAKAFAEANGLSFIETSALDSTNVEPAF 303
D++ R + +A F L + + SA + N E F
Sbjct: 123 VDVKE-RKVKA-KAITFHRKKNLQYYDISAKSNYNFEKPF 160
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 44.8 bits (101), Expect = 1e-05
Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 10/132 (7%)
Frame = +1
Query: 4 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLSYENV-ERWLRELRDHADQNILIMLVGN 180
DTAGQE Y + S Y ++ + + S ENV +WL E+ + + ++LV
Sbjct: 67 DTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNC-PGVKLVLVAL 125
Query: 181 KSDLR--------HLRSIPTEEAKAFA-EANGLSFIETSALDSTNVEPAFQNILTEIYRI 333
K DLR H + I EE A A + N + ++E SA + V AF TE R+
Sbjct: 126 KCDLRGADEEQVDHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAF----TEAARV 181
Query: 334 VSQRQMRDPPEG 369
Q R +G
Sbjct: 182 ALAAQPRGTKDG 193
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 43.6 bits (98), Expect = 2e-05
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Frame = +1
Query: 4 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLSYENV-ERWLRELRDHADQNILIMLVGN 180
DTAGQE Y + Y + LL + I S NV E+W E++ H I+LVG
Sbjct: 70 DTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQ-HFCPRTPIVLVGL 128
Query: 181 KSDLRH------------LRSIPTEEAKAFAEANGLSFIETSALDSTNVEPAFQ 306
K+DLR L + ++A++ A + ++E SA ++T V FQ
Sbjct: 129 KADLRKDRNATEVLRTQGLTPVTYQQAQSVALSMNAPYVECSAKENTGVNEVFQ 182
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 41.1 bits (92), Expect = 1e-04
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +1
Query: 4 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLSYENV-ERWLRELRDHADQNILIMLVGN 180
DTAGQE Y + Y + L+ + + S +NV E+W+ E+ H N+ I+LVG
Sbjct: 60 DTAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVL-HFCSNLPILLVGC 118
Query: 181 KSDLRH 198
K DLR+
Sbjct: 119 KVDLRN 124
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 40.3 bits (90), Expect = 2e-04
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 14/118 (11%)
Frame = +1
Query: 4 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLSYENV-ERWLRELRDHADQNILIMLVGN 180
DTAGQE Y + Y L+ + + S+ENV E+W E+ H + ++VG
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHC-PGVPCLIVGT 115
Query: 181 KSDLR------------HLRSIPTEEAKAFA-EANGLSFIETSALDSTNVEPAFQNIL 315
+ DLR H + E+ + A E + ++E SAL ++ F +
Sbjct: 116 QIDLRDDPSVQQKLARQHQHPLTHEQGERLARELGAVKYVECSALTQKGLKNVFDEAI 173
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 39.5 bits (88), Expect = 4e-04
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Frame = +1
Query: 4 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLSYENV-ERWLRELRDHADQNILIMLVGN 180
DTAGQE Y + Y + L+ + + S +NV E+W+ E+ H ++ I+LV
Sbjct: 60 DTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVL-HFCSSLPILLVAC 118
Query: 181 KSDLR------------HLRSIPTEEAKAFAEANG-LSFIETSALDSTNVEPAFQN 309
K+DLR + + TEE +A A+ G ++E SA + V F++
Sbjct: 119 KADLRNDPKIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFES 174
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 38.7 bits (86), Expect = 6e-04
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 4 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLSYENVE-RWLRELRDHADQNILIMLVGN 180
DTAGQE Y + Y A L+ + I S ENV +W+ E+ N+ +LVG
Sbjct: 62 DTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLC-PNVPFILVGM 120
Query: 181 KSDLR 195
K+DLR
Sbjct: 121 KADLR 125
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 29.9 bits (64), Expect = 0.30
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +1
Query: 232 FAEANGLSFIETSALDSTNVEPAFQNILTEIYRIVSQRQMRD 357
F GL F+ SA DS + A Q E++RI+S R+MRD
Sbjct: 86 FTGTKGLIFVVDSA-DSNRISEARQ----ELHRIISDREMRD 122
>SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1079
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 381 PDDVTLGRVAHLPLRHDPVD 322
P + LGRVA L + H PVD
Sbjct: 987 PQIIELGRVASLEMNHKPVD 1006
>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 168 HDEDVLVGVVAQLAQPPLHVLVRQVLGD 85
HD+++LVG + QP HV+ +L D
Sbjct: 107 HDQEMLVGPRTKEGQPGYHVVTPFILDD 134
>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = -3
Query: 453 LLLAALAPHTVGLRGPHVGGLGVGPDDVTLGRVAHLPLRHDP 328
L L ALAPH VG GG P + L L +DP
Sbjct: 228 LTLGALAPHRVGRIASISGGARSHPYSIALRFTQRQILMNDP 269
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.0 bits (52), Expect = 8.5
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 34 ITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQNILIMLVGNKSDLRHLRSIP 213
I+ +YR +LV I H + N ER L++ N+L+ N+S +R R I
Sbjct: 595 ISVLFYRHKCFPVLV--IVPHATVANWERELKKWAPFLQINVLVGSEKNRSLVRDYRLIN 652
Query: 214 TEEAK 228
++ K
Sbjct: 653 QKDPK 657
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 124 LRELRDHADQN---ILIMLVGNKSDLRHLRSIPTEEAKAFAEA 243
+RE+RDHA N +L++L L++ + P E +EA
Sbjct: 52 IREMRDHAFVNLEKLLLVLTSRLFALKNDKKFPNPETAPASEA 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,898,947
Number of Sequences: 5004
Number of extensions: 32579
Number of successful extensions: 129
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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