Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0179
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    25   0.43 
AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    24   0.99 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   0.99 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   4.0  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 495 QPLDILTPALTVIGLLLAALAP 430
           +P DIL PALT +G + +A+ P
Sbjct: 335 EPPDILMPALTWLGWINSAINP 356


>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 58

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 361 PEGDVIRPDAEPADVRPSQADSV 429
           P GD++ P +EP D    Q+  V
Sbjct: 18  PSGDILSPSSEPLDNDKEQSAQV 40


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 361 PEGDVIRPDAEPADVRPSQADSV 429
           P GD++ P +EP D    Q+  V
Sbjct: 18  PSGDILSPSSEPLDNDKEQSAQV 40


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 560 YVVNTTVWESFIN 522
           YVV  T W SFIN
Sbjct: 384 YVVLETEWSSFIN 396


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 560 YVVNTTVWESFIN 522
           YVV  T W SFIN
Sbjct: 90  YVVLETEWSSFIN 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,915
Number of Sequences: 438
Number of extensions: 2636
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)