Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0178
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo...    27   1.5  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        26   3.4  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    26   3.4  
SPBC1347.11 |sro1||sequence orphan|Schizosaccharomyces pombe|chr...    25   5.9  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    25   5.9  

>SPBC83.13 |||mitochondrial tricarboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
 Frame = -2

Query: 394 AHDAETNVMFYAEVGRDAFSCWNTGKPLTPSNVEILA-KDAIRXSYPS------DLHITD 236
           A    T   F A V   A SCWN  +PL  + VE+ +    I+ S P        ++  +
Sbjct: 200 AEPLTTGQRFVASVSAGALSCWN--QPLEVARVEMQSLTKGIQHSSPGIMQTIMSIYKNN 257

Query: 235 GEVWLMANSLPRFGYXRLDT 176
           G   L   ++PR G     T
Sbjct: 258 GIKGLYRGAVPRMGLGAYQT 277


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 445 RYSIVGERGPNSQYTMHAHDAETNVMFYAEVGRDAFSCW 329
           RY ++G +G N Q   + H  E  V  Y E   D   C+
Sbjct: 576 RY-VIGSKGKNLQKLRNEHQVELLVGEYGEEDPDVIVCY 613


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = -2

Query: 295 EILAKDAIRXSYPSDLHITDGEVWLMANSLPRFGYXRLDTNEYNFF 158
           E+   D    +Y S  H   GE+WL   SL R GY   D      F
Sbjct: 464 EMKLVDCEEGNYNSHGHPPRGEIWLRGPSLTR-GYLNRDKENKESF 508


>SPBC1347.11 |sro1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 106

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 421 GPNSQYTMHAHDAETNVMFYAEVGRDAFSCWNTG 320
           G NS+  M  +D E  + FY +  RD  +  N G
Sbjct: 59  GINSESAMSCNDQEQPLSFYVQTVRDDLNSPNWG 92


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 190 HNRSAATNSPLTTPRRLLCEDLKD 261
           H +  A   P  T  RLLCE+L+D
Sbjct: 63  HLKCVAFLRPTPTTLRLLCEELRD 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,730,554
Number of Sequences: 5004
Number of extensions: 32112
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)