Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0178
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57032| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_48188| Best HMM Match : WHEP-TRS (HMM E-Value=3.5)                  28   3.5  
SB_39219| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.5  
SB_38351| Best HMM Match : PSI (HMM E-Value=0.046)                     28   4.6  
SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_18164| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)                 27   6.1  
SB_47421| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_57032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 446

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = -2

Query: 469 SSGSDDWPRYSIVGERGPNSQYTMHAHDAETNVMFYAEVGRDAFSCWNTGKPLTPSNVEI 290
           S  SDDW  +   G R  N+ Y     +++TN++   +   D     +T  P TP  + +
Sbjct: 300 SDESDDWVPFDHAGRRNINNIYDYEIDNSDTNMISDLDDESDEELNRDTPTPPTPHPLPV 359

Query: 289 L 287
           +
Sbjct: 360 I 360


>SB_48188| Best HMM Match : WHEP-TRS (HMM E-Value=3.5)
          Length = 209

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = -2

Query: 391 HDAETNVMFYAEVGRDAFSCWNTGKPLTPSNVEILAKDAIRXSYPSD-LHITDGEVWLMA 215
           HD E +  F ++    AFS   +G   TP+   I   D+   S  SD L I   +V L  
Sbjct: 64  HDKEED--FDSDTSSGAFSDLESGVS-TPAPELIDGSDSGAESAGSDDLAIKKSKVDLAL 120

Query: 214 NSLPRFGYXRLDTNEYNFFIYRA 146
           N L RFG  R+  NEY   + RA
Sbjct: 121 N-LERFGLGRVYYNEYKDSLKRA 142


>SB_39219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1951

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = -2

Query: 391  HDAETNVMFYAEVGRDAFSCWNTGKPLTPSNVEILAKDAIRXSYPSD-LHITDGEVWLMA 215
            HD E +  F ++    AFS   +G   TP+   I   D+   S  SD L I   +V L  
Sbjct: 1325 HDKEED--FDSDTSSGAFSDLESGVS-TPAPELIDGSDSGAESAGSDDLAIKKSKVDLAL 1381

Query: 214  NSLPRFGYXRLDTNEYNFFIYRA 146
            N L RFG  R+  NEY   + RA
Sbjct: 1382 N-LERFGLGRVYYNEYKDSLKRA 1403


>SB_38351| Best HMM Match : PSI (HMM E-Value=0.046)
          Length = 236

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 326 VPAGEGVPADFGVKHYVGLRVMGMHGILTVWAAFTDY 436
           +P GE  PAD+ +     L +  + G+LT+WA  +D+
Sbjct: 194 LPPGEYNPADWRI-----LEIRRITGLLTIWARISDF 225


>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 315  GFPVFQQEKASRPTSA*NITLVSASWACMVY 407
            GFP F++++A+ PT   ++   S SW  M Y
Sbjct: 2225 GFPTFRRKRANEPTD--HLDHASYSWCLMNY 2253


>SB_18164| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
          Length = 854

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 323 WEAPDAEQRGNTSQRRHKXELSFRSSHNRRRGVVNGE 213
           W   +AEQR +  Q+RH+ E        RR   + GE
Sbjct: 583 WARLEAEQRHHEEQQRHRAEELAFGRTGRRTQAIRGE 619


>SB_47421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 379 TNVMFYAEVGRDAFSCWNTGKPLTPSNVEILAKDAI 272
           TN++  + + RD   C+N  KP TP  V +   D +
Sbjct: 25  TNILLLSSIWRDPLKCFN--KPTTPLVVGLAVADLL 58


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -3

Query: 474 PRPQAAMTGPDTQ*SVNAAQTVNIPCMPMTR-RPT*CFTPKSAGTPSPAGTLGSP 313
           P   +  + P T  + +   T + P  P+T   P+   TP + GTP    TL +P
Sbjct: 135 PSTPSTPSTPSTPSTPSTPSTPSTPSTPITPGTPSTPSTPSAPGTPITPSTLSTP 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,347,945
Number of Sequences: 59808
Number of extensions: 256320
Number of successful extensions: 580
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)