Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0178
(479 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88172-6|AAB42261.1| 310|Caenorhabditis elegans Hypothetical pr... 30 0.76
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 1.3
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 1.3
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 1.3
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 1.3
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 28 4.0
U55363-1|AAK71420.1| 340|Caenorhabditis elegans Serpentine rece... 27 5.3
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 27 5.3
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 27 5.3
U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protei... 27 7.0
>U88172-6|AAB42261.1| 310|Caenorhabditis elegans Hypothetical
protein ZK354.9 protein.
Length = 310
Score = 30.3 bits (65), Expect = 0.76
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 278 VFG*YFHVARRQGLPSVPAG-EGVPADFGVKHYVGLRVMGMHG 403
++G Y RR PSV EGV +D + VG R++ MHG
Sbjct: 117 IYGFYDECQRRYNKPSVYVSFEGVFSDMPLTALVGQRILCMHG 159
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 426 NAAQTVNIPCMPMTRRPT*CFTPKSAGTPSPAGTLGSP 313
N + + PC P+T+ P C P G P PAG G P
Sbjct: 130 NPGKGASAPCEPVTQPP--C-QPCPGGPPGPAGPAGPP 164
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 426 NAAQTVNIPCMPMTRRPT*CFTPKSAGTPSPAGTLGSP 313
N + + PC P+T+ P C P G P PAG G P
Sbjct: 130 NPGKGASAPCEPVTQPP--C-QPCPGGPPGPAGPAGPP 164
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 426 NAAQTVNIPCMPMTRRPT*CFTPKSAGTPSPAGTLGSP 313
N + + PC P+T+ P C P G P PAG G P
Sbjct: 130 NPGKGASAPCEPVTQPP--C-QPCPGGPPGPAGPAGPP 164
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 426 NAAQTVNIPCMPMTRRPT*CFTPKSAGTPSPAGTLGSP 313
N + + PC P+T+ P C P G P PAG G P
Sbjct: 130 NPGKGASAPCEPVTQPP--C-QPCPGGPPGPAGPAGPP 164
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -3
Query: 393 PMTRRPT*CFTPKSAGTPSPAGTLGSP 313
P T R + C T AG P PAGT G+P
Sbjct: 130 PQTGRDSFCITCP-AGPPGPAGTPGAP 155
>U55363-1|AAK71420.1| 340|Caenorhabditis elegans Serpentine
receptor, class h protein30 protein.
Length = 340
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 26 IIFYLIKITIYFSVLLFIRCYKFKILTSAA 115
I FY +KI I S + RC +F IL++ A
Sbjct: 118 ITFYRMKIIIPMSFRYYTRCIQFGILSTVA 147
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -3
Query: 393 PMTRRPT*CFTPKSAGTPSPAGTLGSP 313
P T RP C T AG P PAG G+P
Sbjct: 123 PATGRPGFCITCP-AGAPGPAGPPGAP 148
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -3
Query: 393 PMTRRPT*CFTPKSAGTPSPAGTLGSP 313
P T RP C T AG P PAG G+P
Sbjct: 123 PATGRPGFCITCP-AGAPGPAGPPGAP 148
>U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protein
139 protein.
Length = 310
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -3
Query: 426 NAAQTVNIPCMPMTRRPT*CFTPKSAGTPSPAGTLGSP 313
N + +PC P+T P P AG P G G+P
Sbjct: 138 NPGKPTGLPCDPVTVPPCKPCPPGPAGEPGHDGAPGAP 175
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,651,169
Number of Sequences: 27780
Number of extensions: 188902
Number of successful extensions: 746
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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