Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0178
         (479 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06730.1 68416.m00798 thioredoxin family protein contains Pfa...    27   6.5  
At5g61850.1 68418.m07760 floral meristem identity control protei...    27   8.7  
At1g43560.1 68414.m05000 thioredoxin family protein contains Pfa...    27   8.7  

>At3g06730.1 68416.m00798 thioredoxin family protein contains Pfam
           profile: PF00085 Thioredoxin
          Length = 183

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +1

Query: 160 RSYIRSCRAXHNRSAATN---SPLTTPRRLLC 246
           R  IR   A  + S A N   SPLT PR+LLC
Sbjct: 32  RREIRPVAAPFSSSTAGNLPFSPLTRPRKLLC 63


>At5g61850.1 68418.m07760 floral meristem identity control protein
           LEAFY (LFY) identical to PIR|B38104 LFY floral meristem
           identity control protein, splice form 2 - Arabidopsis
           thaliana; contains Pfam profile PF01698: Floricaula /
           Leafy protein
          Length = 420

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +1

Query: 394 HAWYIDCLGRVHRLLSIWASHRCLRTRC 477
           H W ID +   H  LSIW     LR  C
Sbjct: 355 HGWDIDAVFNAHPRLSIWYVPTKLRQLC 382


>At1g43560.1 68414.m05000 thioredoxin family protein contains Pfam
           profile: PF00085 Thioredoxin; similar to thioredoxin
           GI:142153 from [Synechococcus PCC6301]
          Length = 167

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 369 CFTPKSAGTPSPAGTLGS 316
           CFTP+S+ + SP+ TL S
Sbjct: 13  CFTPESSNSASPSRTLSS 30


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,057,447
Number of Sequences: 28952
Number of extensions: 170091
Number of successful extensions: 407
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)