Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0177
         (763 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.50 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   4.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   4.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   4.6  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = +2

Query: 578 PRAINFPEPQSQVFAFPLTGPVRLPLRPQPETPSGPEPRMPFGPGPDGRMPPFAQAP 748
           P+AI    P +   A  + G    PL     T   P+P +P  P P     P  Q P
Sbjct: 48  PQAILQVRPSTSAAA-DVDGWQVTPLPSDGTTSPEPDPEIPVAPEPAPLASPLVQEP 103


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 603 HSPRYLPSR*PVQYASLCVLSQRHLPV 683
           H  RYL  R  ++ A   VLS+R + +
Sbjct: 253 HYNRYLTRRRRIEIAHTLVLSERQIKI 279


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 603 HSPRYLPSR*PVQYASLCVLSQRHLPV 683
           H  RYL  R  ++ A   VLS+R + +
Sbjct: 253 HYNRYLTRRRRIEIAHTLVLSERQIKI 279


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -1

Query: 667  WLRTQREAYWTGQREGKYLGLWLREIDCPGLISSV 563
            W    RE  W G   G Y+G  L   D P L  +V
Sbjct: 1016 WKPPAREE-WNGDILGYYVGYRLANSDKPYLFETV 1049


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 603 HSPRYLPSR*PVQYASLCVLSQRHLPV 683
           H  RYL  R  ++ A   VLS+R + +
Sbjct: 253 HYNRYLTRRRRIEIAHTLVLSERQIKI 279


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,538
Number of Sequences: 336
Number of extensions: 3740
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)