Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0177
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    33   0.044
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.3  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    28   1.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.3  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    27   2.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   5.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   5.1  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    26   6.7  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   6.7  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    25   8.9  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    25   8.9  

>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 33.1 bits (72), Expect = 0.044
 Identities = 19/49 (38%), Positives = 22/49 (44%)
 Frame = +2

Query: 572 DEPRAINFPEPQSQVFAFPLTGPVRLPLRPQPETPSGPEPRMPFGPGPD 718
           +EP     P P   V   PL G   LP  P PE P   EP +P  P P+
Sbjct: 100 EEPLPREPPLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEPPLPNEPVPE 148


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = +2

Query: 596 PEPQSQVFAFPLTGPVRLPLRPQPETPSGPEPRMPFGPGPDGRMPPFAQAPEQ 754
           P P S   A PL  P  +P  P P  P+ P P     P P   +   A+ P+Q
Sbjct: 448 PLPPSAPIAPPL--PAGMPAAP-PLPPAAPAPPPAPAPAPAAPVASIAELPQQ 497



 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = +2

Query: 626 PLTGPVRLPLRPQPETPSGPEPRMPFGPGPDGRMPPFA 739
           P+  P  LP    P  P    P +P G      +PP A
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSA 453


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +2

Query: 89  DALVADEPLPLANAHALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNHAESKINEDKLQ 268
           D  V+DE   L   +A + +   L   + E  +P   + S FK+    H ++KI +++L 
Sbjct: 801 DTFVSDELNSLCATNAYNRISTFLRMQIDEECKPCQFKKSNFKE----HFQNKIYQEQLD 856

Query: 269 KI 274
           K+
Sbjct: 857 KL 858


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/46 (32%), Positives = 17/46 (36%)
 Frame = +2

Query: 596 PEPQSQVFAFPLTGPVRLPLRPQPETPSGPEPRMPFGPGPDGRMPP 733
           P P       P   P  +P+ P      GP P  P  PG  G  PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP-PPGVAGAGPP 776


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +2

Query: 122 ANAHALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNHAESKINEDKLQKI 274
           + A  ++ +PP  SSV   T+ P+S   S+  D  LN  E+ + E K  +I
Sbjct: 77  SEAPRINEIPPSTSSVEKSTTIPNS---SVVLDHLLNEGENTLEEVKPSEI 124


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 620  AFPLTGPVRLPLRPQPETPSGPEPRMPFGPGPDGRMPPFAQAP 748
            A P++ P   P+RPQ   P  P+   P  P P   +PP   AP
Sbjct: 1684 AHPVSTP---PVRPQSAAP--PQMSAPTPPPPPMSVPPPPSAP 1721


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
 Frame = +2

Query: 596  PEPQSQVFAFPLTGPVRLPLRPQPETPSGPEPR---MPFGPGPDGRMPPFAQAPEQRMP 763
            P P+  V A P+  P   P  P+P   + P P     P  P P    PP   AP   +P
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP-VPAPSSGIP 1179



 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
 Frame = +2

Query: 596  PEPQSQVFAFPLTGPVRLPLRPQPETPSGPEPR----MPFGPGPDGRMPP 733
            P P+  V A P+  P   P  P+P   + P P     +P  P P   +PP
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190



 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/56 (26%), Positives = 20/56 (35%)
 Frame = +2

Query: 596  PEPQSQVFAFPLTGPVRLPLRPQPETPSGPEPRMPFGPGPDGRMPPFAQAPEQRMP 763
            P P S +   P       P+ P  E P  P+P +   P P     P    P   +P
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 581 RAINFPEPQSQVFAFPLTGPVRLPLRP 661
           + ++   P  Q  +F  +GP R P+RP
Sbjct: 496 KQLHLANPNRQAASFNFSGPKRAPIRP 522


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 761 AFFVQELVRKVAFYRQDQVQKASWVQD 681
           A + Q LV+K  FY +  V   +WV+D
Sbjct: 401 ASYRQPLVQKYTFYTRTPVDLNAWVED 427


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 707 VQKASWVQDRKVSLAEDAEGGVLDR 633
           V +A+W++ R V+ A + +   LDR
Sbjct: 471 VDRAAWIRHRAVARAREEDADALDR 495


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 679 GRCLWLRTQREAYW 638
           G  +WLRT+  AYW
Sbjct: 245 GEFIWLRTKTSAYW 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,848
Number of Sequences: 5004
Number of extensions: 61207
Number of successful extensions: 225
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)