Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0177
         (763 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    28   0.36 
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            27   0.63 
AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign...    26   1.5  
EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calc...    25   1.9  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 0.36
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = +2

Query: 650 PLRPQPETPSGPEPRMPFGPGPDGRMPPFAQAPEQRMP 763
           P RP P  P GP+   P  PG  G  PP    P Q  P
Sbjct: 178 PARPNPGMPPGPQMMRP--PGNVG--PPRTGTPTQPQP 211



 Score = 27.9 bits (59), Expect = 0.36
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +2

Query: 635 GPVRL--PLRPQPETPSGPEPRMPFGPGP-DGRMPPFA 739
           GP R   P +PQP  P G  P+ P  P P   +MPP A
Sbjct: 199 GPPRTGTPTQPQPPRPGGMYPQPPGVPMPMRPQMPPGA 236



 Score = 27.9 bits (59), Expect = 0.36
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
 Frame = +2

Query: 596 PEPQSQVFAFPLTGPVRLPLRPQ--PETPSGPEPRM-PFGPGPDG--RMPPFAQAPEQRM 760
           P+P      +P    V +P+RPQ  P    G +P M P  P   G  R P   Q P  R 
Sbjct: 209 PQPPRPGGMYPQPPGVPMPMRPQMPPGAVPGMQPGMQPRPPSAQGMQRPPMMGQPPPIRP 268

Query: 761 P 763
           P
Sbjct: 269 P 269



 Score = 24.6 bits (51), Expect = 3.4
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +2

Query: 659 PQPETPSGPEPRMPFG--PGPDG-RMPPFAQAPEQRMP 763
           P+  TP+ P+P  P G  P P G  MP   Q P   +P
Sbjct: 201 PRTGTPTQPQPPRPGGMYPQPPGVPMPMRPQMPPGAVP 238


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 27.1 bits (57), Expect = 0.63
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = +2

Query: 623 FPLTGPVRLPLRPQPETPSGPEPR-MPFGP--GPDGRMPP 733
           FP     + P  P P  P GP P  +  GP  GP G  PP
Sbjct: 573 FPNLPNAQPPPAPPPPPPMGPPPSPLAGGPLGGPAGSRPP 612



 Score = 25.8 bits (54), Expect = 1.5
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +2

Query: 638 PVRLPLRPQPETPSGPEPRMPFGPGP 715
           P   P  P  + P  P P  P GP P
Sbjct: 570 PAGFPNLPNAQPPPAPPPPPPMGPPP 595


>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative
           FGF-signaling promoter protein.
          Length = 1197

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = +2

Query: 671 TPSGPEPRMPFGP-GPDG 721
           TPSG EP+ P  P GP G
Sbjct: 365 TPSGTEPKTPTSPTGPSG 382


>EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calcium
           channel beta subunitprotein.
          Length = 466

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 632 TGPVRLPLRPQPETPSGPEPRMPFGPGPDGRM 727
           T  V  PL  Q  +PSG +P     P P GR+
Sbjct: 431 TPSVPRPLPSQEASPSGEQPGRMGPPPPTGRL 462


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 786,214
Number of Sequences: 2352
Number of extensions: 16890
Number of successful extensions: 55
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79002570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)