Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0175
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    31   0.20 
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    27   4.2  
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    26   5.6  
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy...    25   9.7  
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.7  

>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = -3

Query: 641 CFLKSSYSIIIESGIV--VT*KSQFCTRAICVIQ*DTKSF--SPKCKLRHFPLSPRR--L 480
           C L  S S +++ G    +  KSQFC  A+ ++  +TK +  S KC      +SP    L
Sbjct: 53  CKLHDSRSALLKCGYASSIDPKSQFCWHALAIVYRETKDYNNSLKCYQNALAISPNNESL 112

Query: 479 YFD 471
           ++D
Sbjct: 113 WYD 115


>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 681 YAIKYRHFLSNN-NLSIKKFTFTELLEQR 764
           YA+++ H  SNN +L +KK T  E  E++
Sbjct: 26  YAVRFAHHTSNNDDLEVKKNTVYERYERK 54


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 353 VVVIVNTNFR*CVYPTKLSVDSFSYIYVAHIDTY 252
           V ++ NT++R   +P  +S+ S +YIY  H D Y
Sbjct: 34  VAILTNTDYR---HPI-VSIGSSTYIYTKHEDLY 63


>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 418 FNVLKTTPELIDLNPTSPSKYKRRGESGKCRNLHFGLNDFVSYC 549
           F  +++TP +  L+P +  + K   +S    +    LNDF+  C
Sbjct: 226 FYPVRSTPHIAILDPRTGERVKEWSKSFTPADFVIALNDFLEGC 269


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 160 EDRLIYNNLKFVYSCCKILRAALICVSDQS 249
           +++ +  N++ VY+CC  LR  +I VS ++
Sbjct: 290 QEKDVDGNVERVYACCAALRHFMIPVSSRA 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,195,611
Number of Sequences: 5004
Number of extensions: 66349
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)