Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0175
         (817 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0733 + 23976835-23976906,23977076-23977279,23977388-239776...    28   7.7  

>06_03_0733 +
           23976835-23976906,23977076-23977279,23977388-23977645,
           23978002-23978217,23978324-23978479,23978556-23978867,
           23978957-23979044,23979224-23979372,23979465-23979755
          Length = 581

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 329 NLYLRLQLQIKATRAHTLQQLYNSITELAYLMCS 430
           ++Y R   Q   +RA  LQQL N+ +EL+ L+C+
Sbjct: 50  DVYRRKVDQASNSRARLLQQLANAKSELSRLLCA 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,514,534
Number of Sequences: 37544
Number of extensions: 348823
Number of successful extensions: 663
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)