Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0175
         (817 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12328| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_49835| Best HMM Match : PKD_channel (HMM E-Value=1.2e-28)           29   4.5  

>SB_12328| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 558

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 263 CGLHICS*SCPLTA*SGTHTNENLYLRLQLQIKATR 370
           CGLH+C   CP +  SG+  +  L L LQ +   TR
Sbjct: 389 CGLHVCYCWCPNSCTSGSGHSVQLQLFLQSRSGQTR 424


>SB_49835| Best HMM Match : PKD_channel (HMM E-Value=1.2e-28)
          Length = 1075

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 6/39 (15%)
 Frame = +3

Query: 42  VQRISIVCHIQKLIHVE------LTFCSVTLICTTRKML 140
           V+++S+VC  + ++HVE      L +  V+L+C TR +L
Sbjct: 535 VEKLSLVCKTRTVMHVEKRKTLGLCYSLVSLVCKTRTVL 573


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,007,641
Number of Sequences: 59808
Number of extensions: 463520
Number of successful extensions: 1592
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)