Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0175
         (817 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10414-12|AAA19079.3|  497|Caenorhabditis elegans Nematode astac...    31   0.75 
U80031-2|AAB37612.1|  468|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    28   9.2  
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    28   9.2  
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    28   9.2  

>U10414-12|AAA19079.3|  497|Caenorhabditis elegans Nematode astacin
           protease protein28 protein.
          Length = 497

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -1

Query: 124 VQINVTLQKVSSTCMSFCMWHTIEIRCTVTDIFYILSC 11
           ++  +T   +++ CM  C W +IE+     D+F +++C
Sbjct: 410 IEFKMTKTPLAAICMQECPWQSIEVNLGKFDLFGMITC 447


>U80031-2|AAB37612.1|  468|Caenorhabditis elegans Hypothetical
           protein B0554.5 protein.
          Length = 468

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = -3

Query: 392 IVVAKYERAWPLFVVVIVNTNFR*CVYPTKLS--VDSFSYIYVAHIDTY 252
           +V  K  + +PLFV+  +NT+F   V+PT +S  + + + IY+A + ++
Sbjct: 245 VVSPKMLQLFPLFVLSGLNTSFWLSVFPTAMSFTMQNSNLIYLAAVYSF 293


>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 690  KYRHFLSNNNLSIKKFTFTELLEQRECHKRLFD 788
            +Y+H L+   L ++K      + ++E +K LFD
Sbjct: 1796 EYKHLLTQELLKVQKIAKEHAMREQESYKSLFD 1828


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 690  KYRHFLSNNNLSIKKFTFTELLEQRECHKRLFD 788
            +Y+H L+   L ++K      + ++E +K LFD
Sbjct: 1699 EYKHLLTQELLKVQKIAKEHAMREQESYKSLFD 1731


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 690  KYRHFLSNNNLSIKKFTFTELLEQRECHKRLFD 788
            +Y+H L+   L ++K      + ++E +K LFD
Sbjct: 1710 EYKHLLTQELLKVQKIAKEHAMREQESYKSLFD 1742


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,472,022
Number of Sequences: 27780
Number of extensions: 363128
Number of successful extensions: 831
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)