Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0175
         (817 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37170.1 68418.m04462 O-methyltransferase family 2 protein si...    29   4.9  
At1g22770.1 68414.m02845 gigantea protein (GI) identical to giga...    28   8.5  
At1g05190.1 68414.m00523 ribosomal protein L6 family protein Sim...    28   8.5  

>At5g37170.1 68418.m04462 O-methyltransferase family 2 protein
           similar to caffeic acid 3-O-methyltransferase [Populus
           tremuloides][SP|Q00763]
          Length = 334

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = -1

Query: 85  CMSFCMWH-TIEIRCT 41
           C+ FC WH T+ IRCT
Sbjct: 122 CIQFCPWHGTLRIRCT 137


>At1g22770.1 68414.m02845 gigantea protein (GI) identical to
           gigantea protein SP:Q9SQI2 from [Arabidopsis thaliana]
          Length = 1173

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 418 FNVLKTTPELIDLNPTSPSKYKRRGESGKCRNLHFGLNDFV 540
           F+   T+    ++NP    KY R  + G  R    G+ DF+
Sbjct: 832 FDTAVTSASRTEMNPRGNHKYARHSDEGSGRPSEKGIKDFL 872


>At1g05190.1 68414.m00523 ribosomal protein L6 family protein
           Similar to Mycobacterium RlpF (gb|Z84395). ESTs
           gb|T75785,gb|R30580,gb|T04698 come from this gene
          Length = 223

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = +2

Query: 326 ENLYLRLQLQIKATRAHTLQQLYNSITELAYLMCSKRLPN*LILIPL-HRQNINGGEKAG 502
           E+ +LR++  ++  RA+ +  L+ ++T+   +  SK     LIL+ + +R  ++G E   
Sbjct: 89  ESGFLRVKKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLILVGVGYRATVDGKELVL 148

Query: 503 NV 508
           N+
Sbjct: 149 NL 150


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,805,873
Number of Sequences: 28952
Number of extensions: 309832
Number of successful extensions: 625
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)