Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0174
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05580.1 68418.m00606 omega-3 fatty acid desaturase, chloropl...    31   0.52 
At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family...    31   0.69 
At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloropl...    30   1.6  
At5g57110.2 68418.m07131 calcium-transporting ATPase 8, plasma m...    28   6.5  
At5g57110.1 68418.m07130 calcium-transporting ATPase 8, plasma m...    28   6.5  
At3g51010.1 68416.m05585 expressed protein                             27   8.5  

>At5g05580.1 68418.m00606 omega-3 fatty acid desaturase,
           chloroplast, temperature-sensitive (FAD8) identical to
           SP:48622 Temperature-sensitive omega-3 fatty acid
           desaturase, chloroplast precursor (EC 1.14.19.-)
           {Arabidopsis thaliana}; contains Pfam profile PF00487:
           Fatty acid desaturase; identical to cDNA plastid fatty
           acid desaturase GI:1030694
          Length = 435

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 500 HLVAATEVVESVAGQLFRRQKRNGPL 423
           HLV ATE  + V G+ +R  K +GPL
Sbjct: 372 HLVEATEAAKPVLGKYYREPKNSGPL 397


>At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family
           protein
          Length = 1332

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = -2

Query: 641 DSGRLSPSVGIHLFSYKGTLGRPSPMIGGRIVAFDPPHNFYLTESTAHLVAATEV 477
           D+G+   S+G  LFSY      P+P+  GR++  D  HN   T+S A     +E+
Sbjct: 546 DAGKSKISLGERLFSYTQ---EPNPVKPGRVIPVDSKHN--KTDSIASKEPGSEI 595


>At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloroplast
           (FAD7) (FADD) identical to omega-3 fatty acid
           desaturase, chloroplast precursor SP:P46310 [Arabidopsis
           thaliana (Mouse-ear cress)]; identical to Pfam profile
           PF00487: Fatty acid desaturase; identical to cDNA
           plastid fatty acid desaturase GI:809491
          Length = 446

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 500 HLVAATEVVESVAGQLFRRQKRNGPL 423
           HLV ATE  + V G+ +R   ++GPL
Sbjct: 379 HLVEATEAAKPVLGKYYREPDKSGPL 404


>At5g57110.2 68418.m07131 calcium-transporting ATPase 8, plasma
           membrane-type / Ca(2+)-ATPase isoform 8 (ACA8) identical
           to calcium-transporting ATPase 8, plasma membrane-type
           SP:Q9LF79 from [Arabidopsis thaliana]
          Length = 1074

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = -3

Query: 226 ITNVAAAPFLATFVNSIGIFFLFFSNA*NVYSYVFV*SLTLVLQKQNSMKFQNVNAARQN 47
           I  VAA   LA  + + GI   ++      ++ + V  +T V   + S++FQN+N  ++N
Sbjct: 196 ILMVAAVASLALGIKTEGIKEGWYDGGSIAFAVILVIVVTAVSDYKQSLQFQNLNDEKRN 255


>At5g57110.1 68418.m07130 calcium-transporting ATPase 8, plasma
           membrane-type / Ca(2+)-ATPase isoform 8 (ACA8) identical
           to calcium-transporting ATPase 8, plasma membrane-type
           SP:Q9LF79 from [Arabidopsis thaliana]
          Length = 1074

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = -3

Query: 226 ITNVAAAPFLATFVNSIGIFFLFFSNA*NVYSYVFV*SLTLVLQKQNSMKFQNVNAARQN 47
           I  VAA   LA  + + GI   ++      ++ + V  +T V   + S++FQN+N  ++N
Sbjct: 196 ILMVAAVASLALGIKTEGIKEGWYDGGSIAFAVILVIVVTAVSDYKQSLQFQNLNDEKRN 255


>At3g51010.1 68416.m05585 expressed protein
          Length = 188

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 116 ITDTRLAKTK*YEVPKRQRSQTEP 45
           +TDTRL K +    PKR+RS+ +P
Sbjct: 68  LTDTRLPKRRPMTHPKRKRSKLKP 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,226,919
Number of Sequences: 28952
Number of extensions: 262546
Number of successful extensions: 611
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)