Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0172
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21786| Best HMM Match : DUF383 (HMM E-Value=0)                     124   5e-29
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         29   2.5  
SB_35| Best HMM Match : zf-U1 (HMM E-Value=0.12)                       29   2.5  
SB_16669| Best HMM Match : Phage_integrase (HMM E-Value=0.28)          28   5.8  
SB_35938| Best HMM Match : BTB (HMM E-Value=8.5e-24)                   27   7.6  
SB_8634| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  
SB_25662| Best HMM Match : HLH (HMM E-Value=2.3e-14)                   27   7.6  

>SB_21786| Best HMM Match : DUF383 (HMM E-Value=0)
          Length = 335

 Score =  124 bits (299), Expect = 5e-29
 Identities = 57/137 (41%), Positives = 87/137 (63%)
 Frame = +1

Query: 1   PFCNYDVSNIRKGGAIGTIRNISFDTDYHEFLVSPDLDLLTYILYPLMGNEDYPDDEMET 180
           PF  +  S  R+GG +  ++N  F+TD H++L++ ++D+L ++L PL G E+  ++E + 
Sbjct: 192 PFTQHKSSLNRRGGVVTILKNCCFETDTHDWLLNDEVDILPHLLLPLAGGEELTEEETDK 251

Query: 181 LPVTLQYLPKEKRREPDIDIRILILETLNKLCAQRRGRQYLRENGVYYIMREYHKWEKDP 360
           LP  LQYL + K RE D DIR ++LE+L +L A + GR  +R+  VY I+RE H WEKD 
Sbjct: 252 LPPDLQYLDESKERETDPDIRNMLLESLLQLLATKNGRTIMRDKNVYVILRELHNWEKDE 311

Query: 361 KALIACENVVDILIQKE 411
            A   C   + ILI +E
Sbjct: 312 IAQATCLKCIHILIGEE 328


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 151 EDYPDDEMETLPVTLQYLPKEKRREPDI 234
           ED  D+E+ T+ +T +Y P    R PDI
Sbjct: 289 EDKNDEEVPTVKITAEYAPTPASRIPDI 316


>SB_35| Best HMM Match : zf-U1 (HMM E-Value=0.12)
          Length = 366

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 337 ILSLYSTLRSRVNTVCLYVEHTICSVSPVSEYVC 236
           I   YS   S  + + LY+   +C V  +SEYVC
Sbjct: 270 IKKAYSQYASHNHLLRLYITEHVCYVGYISEYVC 303


>SB_16669| Best HMM Match : Phage_integrase (HMM E-Value=0.28)
          Length = 580

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -2

Query: 376 TLSKLSGLFPIYDILSLY---STLRSRVNTVCLYVEHTICSVSPVS 248
           T S L   F  + +  LY   + L + ++TVCLYV+    S++P S
Sbjct: 275 TYSNLKTQFKAFFLFCLYFDLTPLPADIDTVCLYVQFLSRSIAPPS 320


>SB_35938| Best HMM Match : BTB (HMM E-Value=8.5e-24)
          Length = 467

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
 Frame = -3

Query: 477 IESFPQFLRYFYC*QVLRT-----DLVFLLNQYI 391
           ++ F + LRY YC QV+ T     D+++L  +YI
Sbjct: 79  VDGFQELLRYLYCDQVVFTGKNVLDVLYLSKKYI 112


>SB_8634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 331 SLYSTLRSRVNTVCLYVEHTICSVSPVSEYVCLYQALSAS 212
           +L+STL+  V+T+C Y    I    PV     LY  LSA+
Sbjct: 6   ALFSTLQLDVSTICRY-RVGIWKKRPVYHITLLYHLLSAT 44


>SB_25662| Best HMM Match : HLH (HMM E-Value=2.3e-14)
          Length = 468

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
 Frame = +1

Query: 148 NEDYPDDEMETLPVTLQYLPK---EKRREPDIDIRILILETLNKLCAQRRGRQYLRENGV 318
           N++  D + E + VT +   +   EKRR   +++ I  L  +  +CA    R+ L +  V
Sbjct: 122 NQEEKDVKEEPVKVTRRRTTRNESEKRRRDKLNVYITELAAMVPMCAS--SRKKLDKTTV 179

Query: 319 YYIMREYHKWEKD-PKALIACENVVDILIQKEDEVG 423
             +   Y K   D   +++A E  V       DEVG
Sbjct: 180 LQMAVNYMKIHNDLTTSVLAKEPAVQSSFLSGDEVG 215


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,717,067
Number of Sequences: 59808
Number of extensions: 356465
Number of successful extensions: 934
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)