Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0172
         (548 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.          23   6.6  
U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.          23   6.6  
U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.          23   6.6  
CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.           23   8.8  
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    23   8.8  

>U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -2

Query: 490 HYWFY*IFPSIPQVL-LLLTGPPHRPRLPSESVYPLHSHTLSKLSGLFPIYDILSLYSTL 314
           H+ FY      P+   +LLT  P  P+   E +  +   T +  +    I  +LSLY++ 
Sbjct: 88  HHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG 147

Query: 313 RS 308
           R+
Sbjct: 148 RT 149


>U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -2

Query: 490 HYWFY*IFPSIPQVL-LLLTGPPHRPRLPSESVYPLHSHTLSKLSGLFPIYDILSLYSTL 314
           H+ FY      P+   +LLT  P  P+   E +  +   T +  +    I  +LSLY++ 
Sbjct: 88  HHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG 147

Query: 313 RS 308
           R+
Sbjct: 148 RT 149


>U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -2

Query: 490 HYWFY*IFPSIPQVL-LLLTGPPHRPRLPSESVYPLHSHTLSKLSGLFPIYDILSLYSTL 314
           H+ FY      P+   +LLT  P  P+   E +  +   T +  +    I  +LSLY++ 
Sbjct: 88  HHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG 147

Query: 313 RS 308
           R+
Sbjct: 148 RT 149


>CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.
          Length = 376

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -2

Query: 490 HYWFY*IFPSIPQVL-LLLTGPPHRPRLPSESVYPLHSHTLSKLSGLFPIYDILSLYSTL 314
           H+ FY      P+   +LLT  P  P+   E +  +   T +  +    I  +LSLY++ 
Sbjct: 88  HHTFYNELRVAPEEHPVLLTEAPLNPKSNREKMTQIMFETFAAPAVYVAIQAVLSLYASG 147

Query: 313 RS 308
           R+
Sbjct: 148 RT 149


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 20  CPTYGRVVRSVQYVIYH 70
           CP  G  V  V++V++H
Sbjct: 938 CPECGDAVEDVEHVLFH 954


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,009
Number of Sequences: 2352
Number of extensions: 12211
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)