Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0172
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063...    57   9e-09
At4g28010.1 68417.m04018 pentatricopeptide (PPR) repeat-containi...    31   0.67 
At3g59000.1 68416.m06576 F-box family protein contains F-box dom...    29   1.5  
At1g23870.1 68414.m03011 glycosyl transferase family 20 protein ...    29   2.0  
At4g24190.2 68417.m03473 shepherd protein (SHD) / clavata format...    29   2.7  
At4g24190.1 68417.m03472 shepherd protein (SHD) / clavata format...    29   2.7  
At2g47240.1 68415.m05899 long-chain-fatty-acid--CoA ligase famil...    29   2.7  
At3g21190.1 68416.m02678 expressed protein contains Pfam PF03138...    28   3.6  
At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing...    28   4.7  
At1g10830.1 68414.m01244 sodium symporter-related contains five ...    28   4.7  
At5g52790.1 68418.m06551 CBS domain-containing protein-related c...    27   6.2  
At4g34370.1 68417.m04883 IBR domain-containing protein similar t...    27   6.2  
At4g15070.1 68417.m02315 DC1 domain-containing protein contains ...    27   8.3  

>At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063:
           Domain of unknown function (DUF383) and  PF04064: Domain
           of unknown function (DUF384)
          Length = 339

 Score = 56.8 bits (131), Expect = 9e-09
 Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 5/137 (3%)
 Frame = +1

Query: 13  YDVSN-IRKGGAIGTIRNISFDT--DYHEFLVSPDLDLLTYILYPLMGNEDYPDDEMETL 183
           +D +N +RK G  GTIRN  F+        L+  +  L   +L P+ G++ Y + ++  +
Sbjct: 190 FDSTNQLRKKGVAGTIRNCCFEAKNQLQNILLISEF-LWPALLLPVAGSKTYSEQDVAKM 248

Query: 184 PVTL-QYLPKEKRREPDIDIRILILETLNKLCAQRRGRQ-YLRENGVYYIMREYHKWEKD 357
           P  L   L  E+    D DIR+  LE +  +  +  GR+ +   NG   +   Y ++E+D
Sbjct: 249 PPELGSALSIEREPVTDPDIRVQTLEAIYLIILEEAGRRAFWSVNGPRILQLGY-EYEED 307

Query: 358 PKALIACENVVDILIQK 408
           PKA+ A E V  +L+++
Sbjct: 308 PKAMRAYEQVGSLLVEE 324


>At4g28010.1 68417.m04018 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 704

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = +1

Query: 61  NISFDTDYHEFLVSPDLDLLTYILYPLMGNEDYPDDEMETLPVTLQYLPKEKRREPDIDI 240
           NI+++          DLD  + +LY ++ +  Y D ++ +    +  L KE R    +DI
Sbjct: 387 NITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDI 446

Query: 241 RILILETL 264
             L++E L
Sbjct: 447 YDLLVEKL 454


>At3g59000.1 68416.m06576 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 491

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 52  TIRNISFDTDYHEFLVSPDLDLLTYILYPLMGNEDYPDDEMETL 183
           +++ ++ D+D H    S D   L Y  Y     EDYP  +ME L
Sbjct: 210 SLKTLTIDSDGHLGTFSFDTPSLVYFCYSDYAAEDYPVVKMENL 253


>At1g23870.1 68414.m03011 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein contains Pfam
           profile: PF02358 trehalose-phosphatase
          Length = 867

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +1

Query: 370 IACENVVDILIQKEDEVGAEDLSTVEVPEELRERFNKTNSDFMMN 504
           I  + V++++  +ED V   D   + +P  LR+RFN+    F ++
Sbjct: 186 IFSDRVMEVINPEEDYVWIHDYHLMVLPTFLRKRFNRIKLGFFLH 230


>At4g24190.2 68417.m03473 shepherd protein (SHD) / clavata formation
           protein, putative nearly identical to SHEPHERD
           [Arabidopsis thaliana] GI:19570872; contains Pfam
           profiles PF02518: ATPase, histidine kinase-, DNA gyrase
           B-, and HSP90-like domain protein, PF00183: Hsp90
           protein
          Length = 823

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +1

Query: 295 QYLRENGVYYIMREYHKWEKDPKALIACENVVDILIQKEDEVGAEDLSTVEVPEELRE 468
           +YL E+ +  +++ Y ++   P +L A + V   +  +EDE   E+  T    EE  E
Sbjct: 258 EYLEESKLKELVKRYSEFINFPISLWASKEVETEVPVEEDESADEETETTSTEEEKEE 315


>At4g24190.1 68417.m03472 shepherd protein (SHD) / clavata formation
           protein, putative nearly identical to SHEPHERD
           [Arabidopsis thaliana] GI:19570872; contains Pfam
           profiles PF02518: ATPase, histidine kinase-, DNA gyrase
           B-, and HSP90-like domain protein, PF00183: Hsp90
           protein
          Length = 823

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +1

Query: 295 QYLRENGVYYIMREYHKWEKDPKALIACENVVDILIQKEDEVGAEDLSTVEVPEELRE 468
           +YL E+ +  +++ Y ++   P +L A + V   +  +EDE   E+  T    EE  E
Sbjct: 258 EYLEESKLKELVKRYSEFINFPISLWASKEVETEVPVEEDESADEETETTSTEEEKEE 315


>At2g47240.1 68415.m05899 long-chain-fatty-acid--CoA ligase family
           protein / long-chain acyl-CoA synthetase family protein
           similar to GI:1617270 (MF7P) and gi:1617628 (MF45P) from
           [Brassica napus] ; contains Pfam AMP-binding enzyme
           domain PF00501
          Length = 660

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 343 KWEKDPKALIACENVVDILIQKEDEVGAEDLSTVEVPEELRERFNKTNSDFMMNL 507
           K  K  KA+++  NV D L  K  E+G +  S ++     RE+   TN     N+
Sbjct: 168 KCAKRLKAIVSFTNVSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNI 222


>At3g21190.1 68416.m02678 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 422

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +1

Query: 361 KALIACENVVDILIQKEDEVGAEDLSTVEVPEELRERFNKTNSD 492
           K + + ENVV ++ +  +EV   +++ V+VP  + E + K + D
Sbjct: 147 KLIKSLENVVKVVKKLPEEVSLRNMAIVKVPTRVTEDYIKEHID 190


>At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing
           protein
          Length = 776

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -3

Query: 519 NSLLQIHHKITIGFIESFPQFLRYFYC*QVLRTDLVFLLNQYIHYILTRYQ 367
           NSL+ I  K    F+ES    +   +    L  DL+  L  YIH +LT  Q
Sbjct: 175 NSLMTIEAKKKYEFLESISAIMDSHFKYFKLGYDLLSQLEPYIHQVLTYAQ 225


>At1g10830.1 68414.m01244 sodium symporter-related contains five
           transmembrane domains; Interpro IPR001991
           Sodium:dicarboxylate symporter; EST gb|F13926 comes from
           this gene
          Length = 367

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -2

Query: 478 Y*IFPSIPQVLLLLTGPPHRPRLPSESVYPLH---SHTLSKLSGLFPIYDILSLYSTLR 311
           Y +  S P  LLLL   P RP L      P H    ++ S LS   P+   + + STLR
Sbjct: 4   YHLLLSSPPSLLLLPPSPRRPNLTLIRRIPAHPRLGNSTSLLSSSSPVIRKILVRSTLR 62


>At5g52790.1 68418.m06551 CBS domain-containing protein-related
           contains Pfam profile PF01595: Domain of unknown
           function, weak hit to PF00571: CBS domain
          Length = 500

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 400 SVYPLHSHTLSKLSGLFPIYDILSLYSTLRSRVNTVCLYVEHTICSVSPVSE 245
           S+  L    + K+    P+YDIL+++ T RS +  V     HT  + +PV E
Sbjct: 271 SIRDLPIRRMPKVDLNLPLYDILNIFQTGRSHMAAVVGTKNHTNTN-TPVHE 321


>At4g34370.1 68417.m04883 IBR domain-containing protein similar to
           SP|Q94981 Ariadne-1 protein (Ari-1) {Drosophila
           melanogaster}; contains Pfam profile PF01485: IBR domain
          Length = 597

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 33/141 (23%), Positives = 61/141 (43%)
 Frame = +1

Query: 106 DLDLLTYILYPLMGNEDYPDDEMETLPVTLQYLPKEKRREPDIDIRILILETLNKLCAQR 285
           DL+  T+  +    + D    E +      + + K ++RE  +     +   L++L   R
Sbjct: 346 DLNRYTHYHHRYKAHTDSSKLEDKLRDTIHEKVSKSEKRELKLKDFSWVTNGLDRLFRSR 405

Query: 286 RGRQYLRENGVYYIMREYHKWEKDPKALIACENVVDILIQKEDEVGAEDLSTVEVPEELR 465
           R   Y      Y    E  K E  P+     +N+ +   Q++ E   E LS     + L 
Sbjct: 406 RVLSYSYAFAYYMFGEEMFKDEMTPEEREIKKNLFEDQ-QQQLESNVEKLS-----QFLE 459

Query: 466 ERFNKTNSDFMMNLQ*RIINL 528
           E F++ ++D +M ++ +IINL
Sbjct: 460 EPFDEFSNDKVMAIRIQIINL 480


>At4g15070.1 68417.m02315 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 889

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/72 (23%), Positives = 34/72 (47%)
 Frame = +1

Query: 67  SFDTDYHEFLVSPDLDLLTYILYPLMGNEDYPDDEMETLPVTLQYLPKEKRREPDIDIRI 246
           SF       L+S    +++++++    +E  PD E E  P        E   EP+ID+ +
Sbjct: 129 SFSLTPEPELISLINQIISHVVFRQRQSESMPDLEAELEPEP----DSEPESEPEIDLEM 184

Query: 247 LILETLNKLCAQ 282
            ++  + +L +Q
Sbjct: 185 NLISLITQLISQ 196


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,389,538
Number of Sequences: 28952
Number of extensions: 243691
Number of successful extensions: 692
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)