Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0171
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    28   1.4  
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    27   3.3  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    26   4.4  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           25   7.7  
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr...    25   7.7  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   7.7  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +1

Query: 331  LERPGTELHRPDRP---ISLFEGVIGRLYLVEELAHAMD 438
            LER GT++  PDR     SL   VI R  +  EL   +D
Sbjct: 1988 LERVGTDIQEPDRQGVMFSLVRAVIARKIMTPELYKIID 2026


>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = +1

Query: 112 PLCILAYQVFEDEKYLKIALHCGEVIWQRGLCTKGYSLCHGVSGNAYAFIQLFQAT 279
           P C+    + ED+++ K  +HC +       C++ + L  G   + Y  I  +  T
Sbjct: 151 PFCLDHSYILEDQQHNKCLVHCNQSRKDLLGCSQLFLLLKGSFTHEYLTIDFYNGT 206


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 100 PGFVPLCILAYQVFEDE 150
           PGF PLCIL Y + ED+
Sbjct: 585 PGF-PLCILEYGIVEDQ 600


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 622 MFLFIY*INCKLHINLTSRMIFIYYY 545
           M  FIY  N  L+ NL   ++F+Y Y
Sbjct: 276 MLSFIYFENVALYTNLLLAIVFVYNY 301


>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/49 (24%), Positives = 18/49 (36%)
 Frame = +3

Query: 189 MATWTLYKRLQSLSWSQWKCLRXXXXXXXXXXXXXXXPGVLFHGVVCIR 335
           +  WT  K    L W+QW CL                  +   GV+C++
Sbjct: 111 LQNWTPEKNRYGLIWNQW-CLSHLTDEDLIAYLSRCCEAIQEKGVICVK 158


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 405 IFGGRTCSCYGRQVSSIINLVDTGD*RKNGDDTKIQPSLKEAVN 536
           ++GGRT SC  + +  + N++   D  + GD +   PS K+ ++
Sbjct: 610 VYGGRTLSCTHKDIFDLQNILRYCD--ERGDFSSF-PSFKKLIS 650


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,944,801
Number of Sequences: 5004
Number of extensions: 63153
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)