Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0171
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006722-1|AAK68420.1|  401|Caenorhabditis elegans Hypothetical ...    29   4.1  
AC006645-6|AAF39847.1|  462|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z81553-11|CAC14333.1|  311|Caenorhabditis elegans Hypothetical p...    28   5.4  
U97007-3|AAB52299.1|  374|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF003385-7|AAB54247.1|  381|Caenorhabditis elegans Serpentine re...    28   5.4  
Z81047-5|CAB02832.3|  390|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z49911-6|CAA90132.1|  831|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AC006774-8|AAY43992.1|  295|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z67880-3|CAA91795.1|  248|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z67879-5|CAA91790.1|  248|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U53181-7|AAA93487.1|  472|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy...    27   9.4  
AF024497-5|AAO21477.1|  871|Caenorhabditis elegans Defective in ...    27   9.4  
AF024497-4|AAO21479.1|  807|Caenorhabditis elegans Defective in ...    27   9.4  
AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in ...    27   9.4  
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ...    27   9.4  

>AC006722-1|AAK68420.1|  401|Caenorhabditis elegans Hypothetical
           protein Y19D10A.7 protein.
          Length = 401

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
 Frame = -1

Query: 181 LHNAKRFLNIFHLQIPDRL---ICITARNQEPHDTTGPTCLRCYCSKTTENFHSETVDST 11
           ++N   F N+  +QI   L    CIT +  +   TT    L C   K  EN  +   DS 
Sbjct: 175 IYNPNAFTNVIKIQIEANLHEDFCITTQEMQTFITTEFASLNCRPCKICENNVNMCNDSL 234

Query: 10  TN 5
            N
Sbjct: 235 EN 236


>AC006645-6|AAF39847.1|  462|Caenorhabditis elegans Hypothetical
           protein F56A4.9 protein.
          Length = 462

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
 Frame = -1

Query: 181 LHNAKRFLNIFHLQIPDRL---ICITARNQEPHDTTGPTCLRCYCSKTTENFHSETVDST 11
           ++N   F N+  +QI   L    CIT +  +   TT    L C   K  EN  +   DS 
Sbjct: 220 IYNPNAFTNVIKIQIEANLHEDFCITTQEMQTFITTEFASLNCRPCKICENNVNMCNDSL 279

Query: 10  TN 5
            N
Sbjct: 280 EN 281


>Z81553-11|CAC14333.1|  311|Caenorhabditis elegans Hypothetical
           protein F56H6.13 protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = +2

Query: 170 CIVERLYG---NVDSVQKVTVFVMESVEMPTLSFNC 268
           C+VER+Y    N+ + + +T  +ME+   P LS+NC
Sbjct: 157 CVVERIYNGLWNIQNDRNMTFILMEAHAAP-LSWNC 191


>U97007-3|AAB52299.1|  374|Caenorhabditis elegans Hypothetical
           protein ZC196.9 protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -3

Query: 575 NFKDDIYLLLQFTVYSLFKTWLYLSIVSIFTLISSI 468
           N K+ I LLL  +     K WLY S+VS+F ++S+I
Sbjct: 48  NLKNSIKLLLDISDSE--KNWLYYSVVSLF-VVSTI 80


>AF003385-7|AAB54247.1|  381|Caenorhabditis elegans Serpentine
           receptor, class w protein7 protein.
          Length = 381

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 662 KEILKRCVHINISNVFIYLLNKLQITHKFNFKDDIYLLLQFTVY 531
           +++ K C +   S V   LLN  ++  KFN+ D    L+  T+Y
Sbjct: 200 EKVTKYCTYNRPSYVPYLLLNNEKLVDKFNYADSCISLVVSTLY 243


>Z81047-5|CAB02832.3|  390|Caenorhabditis elegans Hypothetical
           protein C41G6.7 protein.
          Length = 390

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 605 LNKLQITHKFNFKDDIYLLLQFTVYSLFKTWLYLSIVSI 489
           ++   IT   NF + IY +LQFT+Y L    L + +  I
Sbjct: 213 IDAYSITPNQNFVERIYRVLQFTLYPLLTISLLIQLCII 251


>Z49911-6|CAA90132.1|  831|Caenorhabditis elegans Hypothetical
           protein M28.8 protein.
          Length = 831

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 206 QSPRCHITSPQCKAIFKYFSSSN 138
           QSP+C+ T+PQ K++   F +SN
Sbjct: 22  QSPQCNQTTPQIKSMKPNFGASN 44


>AC006774-8|AAY43992.1|  295|Caenorhabditis elegans Hypothetical
           protein Y46H3A.7 protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
 Frame = +2

Query: 173 IVERLYGNVDSVQKVTVFVM-ESVEMPTL-------SFNCFKPLRKHFICTGRVVSWSGV 328
           I  ++YG++  V KV V V  E    P L       SF+CF  + KHF     +V    V
Sbjct: 42  IRHQVYGDLKKVDKVVVSVRTEDKAQPVLVNRNVSTSFHCFNHISKHFADDAVLVE---V 98

Query: 329 H*SDPGPNYIDLTDP 373
           H S  G  +  +  P
Sbjct: 99  HPSVGGAYFSSVNQP 113


>Z67880-3|CAA91795.1|  248|Caenorhabditis elegans Hypothetical
           protein C34E7.4 protein.
          Length = 248

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 223 LCHGVSGNAYAFIQLFQATKKA 288
           +CH + G+   F+Q+FQA K A
Sbjct: 126 ICHTMGGSLKNFVQIFQADKPA 147


>Z67879-5|CAA91790.1|  248|Caenorhabditis elegans Hypothetical
           protein C34E7.4 protein.
          Length = 248

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 223 LCHGVSGNAYAFIQLFQATKKA 288
           +CH + G+   F+Q+FQA K A
Sbjct: 126 ICHTMGGSLKNFVQIFQADKPA 147


>U53181-7|AAA93487.1|  472|Caenorhabditis elegans Hypothetical
           protein F36D4.4 protein.
          Length = 472

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
 Frame = +1

Query: 106 FVPLCILAYQ--VFEDEKYLKIALHCGEVIWQRGLCTKGYSL------CHGVSGNAYAFI 261
           FV + +L ++  V  +  Y+ I LHC  +   RG+C   Y L       + ++ + +  I
Sbjct: 42  FVIIALLRHRRRVLSNVFYV-IVLHCAVLDVARGVCLILYGLPYFANSFYNINLDIHTRI 100

Query: 262 QLFQATKKALHLYRAC 309
            LFQ ++ AL + R C
Sbjct: 101 HLFQLSRFALVILRVC 116


>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
           cytoplasmic polyA polymeraseprotein.
          Length = 1113

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 200 PRCHITSPQCKAIFKYFSSSNT**ANMHNGTKPGAP*HH 84
           P+ H  S   K      SS++T  +++HNG  PG P HH
Sbjct: 820 PKIHSNSEGDKETPPPSSSAST--SSIHNGGTPGIPMHH 856


>AF024497-5|AAO21477.1|  871|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform b protein.
          Length = 871

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 200 PRCHITSPQCKAIFKYFSSSNT**ANMHNGTKPGAP*HH 84
           P+ H  S   K      SS++T  +++HNG  PG P HH
Sbjct: 578 PKIHSNSEGDKETPPPSSSAST--SSIHNGGTPGIPMHH 614


>AF024497-4|AAO21479.1|  807|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform d protein.
          Length = 807

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 200 PRCHITSPQCKAIFKYFSSSNT**ANMHNGTKPGAP*HH 84
           P+ H  S   K      SS++T  +++HNG  PG P HH
Sbjct: 514 PKIHSNSEGDKETPPPSSSAST--SSIHNGGTPGIPMHH 550


>AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform c protein.
          Length = 1036

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 200 PRCHITSPQCKAIFKYFSSSNT**ANMHNGTKPGAP*HH 84
           P+ H  S   K      SS++T  +++HNG  PG P HH
Sbjct: 743 PKIHSNSEGDKETPPPSSSAST--SSIHNGGTPGIPMHH 779


>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform a protein.
          Length = 1113

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 200 PRCHITSPQCKAIFKYFSSSNT**ANMHNGTKPGAP*HH 84
           P+ H  S   K      SS++T  +++HNG  PG P HH
Sbjct: 820 PKIHSNSEGDKETPPPSSSAST--SSIHNGGTPGIPMHH 856


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,259,877
Number of Sequences: 27780
Number of extensions: 355516
Number of successful extensions: 1044
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)