Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0171
(682 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g20770.1 68415.m02441 lanthionine synthetase C-like family pr... 131 5e-31
At1g52920.1 68414.m05984 lanthionine synthetase C-like family pr... 127 6e-30
At5g65280.1 68418.m08211 lanthionine synthetase C-like family pr... 99 3e-21
At4g18380.1 68417.m02728 F-box family protein contains F-box dom... 31 0.53
At4g16130.1 68417.m02444 GHMP kinase family protein contains GHM... 31 0.93
At5g09330.1 68418.m01081 no apical meristem (NAM) family protein... 29 2.8
At5g46630.2 68418.m05740 clathrin adaptor complexes medium subun... 28 5.0
At5g46630.1 68418.m05741 clathrin adaptor complexes medium subun... 28 5.0
At3g61760.1 68416.m06927 dynamin-like protein B (DL1B) identical... 27 8.7
>At2g20770.1 68415.m02441 lanthionine synthetase C-like family
protein contains Pfam domain, PF05147: Lanthionine
synthetase C-like protein
Length = 405
Score = 131 bits (316), Expect = 5e-31
Identities = 64/158 (40%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Frame = +1
Query: 1 LDWLLSQQFPSGNFPSSLNSSNGDKLVQWCHGAPGFVPLCILAYQVFEDEKYLKIALHCG 180
L +++ +FPSGN+P+S D LV WCHGAPG A +VF + ++L+ +
Sbjct: 249 LKYMIKNRFPSGNYPASEEDKKKDILVHWCHGAPGIALTLGKAAEVFGEREFLEASAAAA 308
Query: 181 EVIWQRGLCTKGYSLCHGVSGNAYAFIQLFQATKKALHLYRACCFMEWCALERPGT---- 348
EV+W RGL K +CHG+SGNAY F+ L++AT ++ +LYRA F + P
Sbjct: 309 EVVWNRGL-LKRVGICHGISGNAYVFLALYRATGRSEYLYRAKAFASFLLDRGPKLLSKG 367
Query: 349 ELHRPDRPISLFEGVIGRLYLVEELAHAMDARFPALSI 462
E+H D P SLFEGV G YL ++ +ARFP +
Sbjct: 368 EMHGGDSPYSLFEGVAGMAYLFLDMVDPSEARFPGYEL 405
>At1g52920.1 68414.m05984 lanthionine synthetase C-like family
protein contains Pfam domain, PF05147: Lanthionine
synthetase C-like protein
Length = 401
Score = 127 bits (307), Expect = 6e-30
Identities = 62/158 (39%), Positives = 94/158 (59%), Gaps = 4/158 (2%)
Frame = +1
Query: 1 LDWLLSQQFPSGNFPSSLNSSNGDKLVQWCHGAPGFVPLCILAYQVFEDEKYLKIALHCG 180
L +++ +FPSGN+ SS S D+LV WCHGAPG + A QV+ +++++ A+ G
Sbjct: 246 LSYMIQNRFPSGNYLSS-EGSKSDRLVHWCHGAPGVALTLVKAAQVYNTKEFVEAAMEAG 304
Query: 181 EVIWQRGLCTKGYSLCHGVSGNAYAFIQLFQATKKALHLYRACCFMEWC--ALERPGTE- 351
EV+W RGL K +CHG+SGN Y F+ L++ T+ +LYRA F + E+ +E
Sbjct: 305 EVVWSRGL-LKRVGICHGISGNTYVFLSLYRLTRNPKYLYRAKAFASFLLDKSEKLISEG 363
Query: 352 -LHRPDRPISLFEGVIGRLYLVEELAHAMDARFPALSI 462
+H DRP SLFEG+ G Y++ ++ A FP +
Sbjct: 364 QMHGGDRPFSLFEGIGGMAYMLLDMNDPTQALFPGYEL 401
>At5g65280.1 68418.m08211 lanthionine synthetase C-like family
protein contains Pfam domain, PF05147: Lanthionine
synthetase C-like protein
Length = 433
Score = 98.7 bits (235), Expect = 3e-21
Identities = 60/159 (37%), Positives = 87/159 (54%), Gaps = 5/159 (3%)
Frame = +1
Query: 1 LDWLLSQQFP-SGNFPSSLNSSNGDKLVQWCHGAPGFVPLCILAYQVFEDEK-YLKIALH 174
L +++S +FP SGN+P S + DKLVQW HGA G A QVF E+ + + A+
Sbjct: 277 LRYMMSNRFPNSGNYPCSEGNPR-DKLVQWAHGATGMAITLAKASQVFPKERDFREAAIE 335
Query: 175 CGEVIWQRGLCTKGYSLCHGVSGNAYAFIQLFQATKKALHLYRACCFMEW-C--ALERPG 345
GEV+W+ GL K L GV+GNAYAF+ L++ T ++ RA F + C A+E
Sbjct: 336 AGEVVWKSGL-VKKVGLADGVAGNAYAFLSLYRLTGDVVYEERAKAFASYLCRDAIELVN 394
Query: 346 TELHRPDRPISLFEGVIGRLYLVEELAHAMDARFPALSI 462
+ SLF G+ G + L +L +D++FP I
Sbjct: 395 MTSQETEHDYSLFRGLAGPVCLWFDLVSPVDSKFPGYEI 433
>At4g18380.1 68417.m02728 F-box family protein contains F-box domain
Pfam:PF00646
Length = 380
Score = 31.5 bits (68), Expect = 0.53
Identities = 24/66 (36%), Positives = 32/66 (48%)
Frame = +1
Query: 16 SQQFPSGNFPSSLNSSNGDKLVQWCHGAPGFVPLCILAYQVFEDEKYLKIALHCGEVIWQ 195
S PSG+ PSSL S GD G P +L + F++ K+LKI L GE+
Sbjct: 119 SSSLPSGSSPSSLLISGGDDGEIEQGGVTHHSPTQVL--KNFDEIKFLKIELPSGELGID 176
Query: 196 RGLCTK 213
G+ K
Sbjct: 177 DGVLLK 182
>At4g16130.1 68417.m02444 GHMP kinase family protein contains GHMP
kinases putative ATP-binding protein domain, Pfam:PF00288
Length = 1039
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 23 SFRVEIFRRL*TVATETSWSSGVMGLLVSCRYAY 124
+FRV+ F+ L T AT + + GLL C Y+Y
Sbjct: 907 NFRVKTFKALLTSATSDEQLTALGGLLYQCHYSY 940
>At5g09330.1 68418.m01081 no apical meristem (NAM) family protein
similar to NAC1 (GI:7716952) {Medicago truncatula};
contains Pfam PF02365: No apical meristem (NAM) protein
Length = 489
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 197 VDSVQKVTVFVMESVEMPTLSFNCFKPLRKHFICTGRVVSWSGV 328
VD++ +V ++ E ++P +SF L+ HF C SGV
Sbjct: 35 VDAIAEVDIYKFEPPDLPDMSFIRSGDLKWHFFCPREKKYASGV 78
>At5g46630.2 68418.m05740 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 441
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = -2
Query: 315 ETTRPVQMKCFLSGLKQ----LNESVGISTDSMTKT 220
+ T V MKCFLSG+ LN+ +G+ +S K+
Sbjct: 202 DVTGKVLMKCFLSGMPDLKLGLNDKIGLEKESEMKS 237
>At5g46630.1 68418.m05741 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 438
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = -2
Query: 315 ETTRPVQMKCFLSGLKQ----LNESVGISTDSMTKT 220
+ T V MKCFLSG+ LN+ +G+ +S K+
Sbjct: 202 DVTGKVLMKCFLSGMPDLKLGLNDKIGLEKESEMKS 237
>At3g61760.1 68416.m06927 dynamin-like protein B (DL1B) identical to
dynamin-like protein B [Arabidopsis thaliana]
GI:27543504; strong similarity to GTP-binding protein
[Arabidopsis thaliana] GI:807577, phragmoplastin SDL5A
[Glycine max] GI:1218004; contains Pfam profiles
PF01031: Dynamin central region, PF00350: Dynamin
family, PF02212: Dynamin GTPase effector domain
Length = 610
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 346 TELHRPDRPISLFEGVIGRLYLVEELAHAMDARF 447
TEL R +P++ G G+LY++ E+ A D F
Sbjct: 315 TELSRLGKPVAADAG--GKLYMIMEICRAFDQTF 346
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,165,079
Number of Sequences: 28952
Number of extensions: 325745
Number of successful extensions: 825
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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