Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0170
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy...   113   2e-26
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar...   109   5e-25
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   3.5  
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    26   4.7  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    26   4.7  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     25   8.2  

>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 256

 Score =  113 bits (272), Expect = 2e-26
 Identities = 59/139 (42%), Positives = 81/139 (58%), Gaps = 4/139 (2%)
 Frame = +1

Query: 304 DNYMYLIVDKATKEAAIVDPVEPKTVLKAVEEQG----VNLXXXXXXXXXXXXAGGNEDL 471
           +NY YL+    TK  AIVDP EP++V+  ++E+     ++L            AGGNED+
Sbjct: 16  NNYAYLLTCDKTKITAIVDPAEPESVIPVIKEKTAKKEIDLQYILTTHHHYDHAGGNEDI 75

Query: 472 IKERPGLIVYGGDDRIGALTKKVEHNTKFKIGNLNVQCLFTPCHTTGHICYFVTAPEEGN 651
           +   P L VYGG +  G +T   +    FK+G + V+ L TPCHT   ICY+V++P +  
Sbjct: 76  LSYFPSLKVYGGKNASG-VTYTPKDKEIFKVGEVQVEALHTPCHTQDSICYYVSSPSK-- 132

Query: 652 DSVVFTGDTLFLGGCGRFF 708
              VFTGDTLF  GCGRFF
Sbjct: 133 -RAVFTGDTLFTSGCGRFF 150


>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 256

 Score =  109 bits (261), Expect = 5e-25
 Identities = 55/140 (39%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
 Frame = +1

Query: 301 QDNYMYLIVDKATKEAAIVDPVEPKTVL----KAVEEQGVNLXXXXXXXXXXXXAGGNED 468
           QDNY YL++ + T++AAIVDP E   V+    K ++ + ++L            +GGN +
Sbjct: 15  QDNYAYLLLCEETRQAAIVDPAEVNVVMPILKKKLKNKEIDLQAILTTHHHADHSGGNLN 74

Query: 469 LIKERPGLIVYGGDDRIGALTKKVEHNTKFKIGNLNVQCLFTPCHTTGHICYFVTAPEEG 648
           L KE P + +YGG D+ G ++  ++     +IGN+ ++ L TPCHT   IC++       
Sbjct: 75  LKKEFPHVTIYGGSDQNG-VSHVLQDKETLRIGNVQIEALHTPCHTRDSICFYA---HSS 130

Query: 649 NDSVVFTGDTLFLGGCGRFF 708
           N+  VFTGDTLF  GCGRFF
Sbjct: 131 NEHAVFTGDTLFNAGCGRFF 150


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 3   DKNKRLIIICVDKQQKICDLRLNTTRYFVMTNKNIINKLYS 125
           ++ K  + I ++   K C +  NT+ +F   N N I+ +YS
Sbjct: 732 EREKHQLDISINSGSKWCYVDFNTSVFFEAINGNSISGMYS 772


>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 116 FIDDVFVGHYKISSGV*SQITDFLLFIYTNYNQSFVL 6
           F D +  GHY   S +   +  F  FI  NYNQ  ++
Sbjct: 305 FFDILLKGHYLNFSLILGSLLVFAGFIVVNYNQQNII 341


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 226 NQREAHSSQEDHQYKNMDVKILPALQDNYMYLIVDKATKE-AAIVDPVEPKTVLKAVEE 399
           +QR+  + +E       D ++L  LQD  M  I+ +A +  AA+++ ++  TV   +E+
Sbjct: 523 SQRQNETEEETMARIQKDPEVLGILQDPAMQAILGQARENPAALMEHMKNPTVKSKIEK 581


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +1

Query: 124 LFKKTYSMLARFVNSLPSGLSQRITKLYFRALIRNQREAHSSQEDHQ 264
           LFKKTY+++A  V+    GL  ++ K   + L+   R  H  Q++++
Sbjct: 33  LFKKTYNLVAAKVSPKKVGLLNKVCK---KDLLDWPRVKHVYQQNNE 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,318
Number of Sequences: 5004
Number of extensions: 52576
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)