Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0168
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.44 
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    27   1.8  
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual       27   1.8  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.5  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    26   5.5  
SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po...    25   7.2  
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    25   9.5  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
 Frame = +3

Query: 108 TSRRPRLTLHRSPTCSPILLDDSPDTLTGNTPKSVTAAES*EENSRTSTHVTRFGQWTTW 287
           TS    LT     T + +    +P T   +TP + T   +      TST VT     TT 
Sbjct: 416 TSSSTPLTTTNCTTSTSVPYTSTPVT---STPLATTNCTTSTSVPYTSTPVTSTPLTTTN 472

Query: 288 LTRKASIRY*ATCLQSTQLTL------NPLPWLKTGTSSYTPRLLKSTP 416
            T   SI Y +T + ST LT         +P+  T  +S    +  STP
Sbjct: 473 CTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTP 521



 Score = 25.0 bits (52), Expect = 9.5
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
 Frame = +3

Query: 174 SPDTLTGNTPKSVTAAES*EENSRTSTHVTRFGQWTTWLTRKASIRY*ATCLQSTQLTLN 353
           S  T   +TP + T   +      TST VT     TT  T   S+ Y +T + S+  T++
Sbjct: 517 SSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTIS 576

Query: 354 ---PL---PWLKTGTSSYTPRLLKSTP 416
              P+   P   T  ++ T  L  STP
Sbjct: 577 SSTPVTSTPVTTTNCTTSTSVLYTSTP 603


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +2

Query: 86  LTSCDVSHLETTTPDPPPKPYV---FSYTAGRFPGHVDREHTE 205
           L S  V  L   +PDPP  P +    S      P HV R++T+
Sbjct: 444 LPSASVPALGDGSPDPPAAPSIQNSLSVHESEMPPHVTRDYTQ 486


>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 364

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +2

Query: 71  VLAAGLTSCDVSHLETTTPDPPPKPYVFSYTAGRFPGHVD--REHTEVSDGSG 223
           V+ AG  S  +SH  + T  P  + + F Y A R+   +   REH  + D  G
Sbjct: 107 VIEAGTGSASMSHAISRTVGPLGRLFTFEYHATRYQTALQEFREHEMLIDVGG 159


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 314  LSDVPPEHP--ADSESVALAKDRHFQLYSKIAEEHAQHPHP 430
            L  +  EH   AD ES+ +A+D +  +   +AEE+ +   P
Sbjct: 2561 LQQLSAEHNRHADLESMVMARDDYINVQQPLAEENQEEGSP 2601


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 383 QLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSEL 496
           +L+ + A   A+HP  Y+T V   SA  AE+T  H  L
Sbjct: 176 RLFIQSAHNIAKHPSLYDTEVRNPSA--AESTNSHVSL 211


>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 350 QSQLGALEARRSVSDGSLPCQPRSPLSEPCDV 255
           ++ L   E +RSV +GSLP   +  L+E  D+
Sbjct: 158 RAHLQVTEIQRSVENGSLPIDGKIVLNEKGDI 189


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 270 GQWTTWLTRKASIRY*ATCLQSTQLTLNPLPWLKTGTSSYTPRLLK 407
           G   TWL R  +I +     +S  L  +PL  + +GT S    LL+
Sbjct: 245 GPTHTWLVRDGTITHEVYTPESFHLQSHPLSSVASGTPSANAILLE 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,855
Number of Sequences: 5004
Number of extensions: 47221
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)