Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0168
(655 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17098| Best HMM Match : WD40 (HMM E-Value=8.9e-32) 30 1.4
SB_32176| Best HMM Match : Keratin_B2 (HMM E-Value=0.53) 29 2.5
SB_8524| Best HMM Match : Keratin_B2 (HMM E-Value=0.53) 29 2.5
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_55244| Best HMM Match : YTV (HMM E-Value=2.8) 29 3.3
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_15168| Best HMM Match : Keratin_B2 (HMM E-Value=1.9) 29 3.3
SB_12976| Best HMM Match : MAM (HMM E-Value=1.10002e-41) 29 3.3
SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6) 29 3.3
SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_37086| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21) 28 5.8
SB_32773| Best HMM Match : DUF1279 (HMM E-Value=0.45) 28 7.6
>SB_17098| Best HMM Match : WD40 (HMM E-Value=8.9e-32)
Length = 808
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = -2
Query: 474 ASATAAD*RGTLVS*GCGCWACSSAILEYSWKCLSLAKATDSESAGCSGGTSLSIGWKPS 295
+SA A R T+ + C++ + A + + KC S+ +AT + + C G T ++ K
Sbjct: 502 SSARTAMTRATVAT-NTKCYSVTRATVATNTKCYSVTRATVATNTKCYGVTRATVATKTK 560
Query: 294 -LSAT*STVRT 265
S T +TV T
Sbjct: 561 CYSVTRATVAT 571
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -2
Query: 420 CWACSSAILEYSWKCLSLAKATDSESAGCSGGTSLSIGWKPS-LSAT*STVRT 265
C++ + A + + KC S+ +AT + + C G T ++ SAT +TV T
Sbjct: 561 CYSVTRATVATNTKCYSVTRATVATNTKCYGVTRATVATNTKCYSATYATVAT 613
>SB_32176| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)
Length = 194
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -2
Query: 495 SSECFKVASATAAD*RGTLVS*GCGCWACSSAILEYSWKCLSLAKATDSESAGCSGGTSL 316
+++C+ V AT A C++ + A + + KC S +AT + + C T
Sbjct: 78 NTKCYSVTCATVAT--------NTKCYSATRATVATNTKCYSATRATVATNTKCYSATRA 129
Query: 315 SIGWK-PSLSAT*STVRT 265
++ S SAT +TV T
Sbjct: 130 TVATNTKSYSATRATVAT 147
>SB_8524| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)
Length = 194
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -2
Query: 495 SSECFKVASATAAD*RGTLVS*GCGCWACSSAILEYSWKCLSLAKATDSESAGCSGGTSL 316
+++C+ V AT A C++ + A + + KC S +AT + + C T
Sbjct: 78 NTKCYSVTCATVAT--------NTKCYSATRATVATNTKCYSATRATVATNTKCYSATRA 129
Query: 315 SIGWK-PSLSAT*STVRT 265
++ S SAT +TV T
Sbjct: 130 TVATNTKSYSATRATVAT 147
>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 4 CYHTVTLRSCARFKDAVPHTHSGAGCRPDQLRRVSPRD 117
C+ ++T R C+R D + SG GC+P + RD
Sbjct: 767 CHPSITERQCSRCLDHYFNFTSGVGCQPCGCNELYSRD 804
>SB_55244| Best HMM Match : YTV (HMM E-Value=2.8)
Length = 221
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -2
Query: 420 CWACSSAILEYSWKCLSLAKATDSESAGCSGGTSLSIGWKPS-LSAT*STVRT 265
C++ + A + + KC S+ +AT + + C G T ++ K S T +TV T
Sbjct: 12 CYSVTRATVATNTKCYSVTRATVATNTKCYGVTRATVATKTKCYSVTRATVAT 64
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -2
Query: 420 CWACSSAILEYSWKCLSLAKATDSESAGCSGGTSLSIGWKPS-LSAT*STVRT 265
C++ + A + + KC S+ +AT + + C G T ++ SAT +TV T
Sbjct: 54 CYSVTRATVATNTKCYSVTRATVATNTKCYGVTRATVATNTKCYSATYATVAT 106
>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2014
Score = 29.1 bits (62), Expect = 3.3
Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 2/133 (1%)
Frame = +2
Query: 125 PDPPPKPYVFSYTAGRFPGHVDREHTEVSDGSGVVRGKFAYVDPRHKVRTVDYVADKEGF 304
P +PY R + E TE DGS G+ + + V+ +A++E
Sbjct: 1769 PPAHTRPYPVQPNIYRLTKKSEEEATECEDGSREDDGERVRITDPYDSSVVEELAEEETD 1828
Query: 305 HPILSDVPPEHPADSESVALAKDRHFQLYSKIAE--EHAQHPHPYETSVPRQSAAVAEAT 478
++D+ P ++ + F L +KI + E H H E + + + E
Sbjct: 1829 RDTIADLDTSTPTKAKKPKKPLLKQFSLPAKIGQLSEDLVH-HSPEKFIRDKQTEMQECV 1887
Query: 479 LKHSELFRVIAEQ 517
L+ S + +++
Sbjct: 1888 LEISLFYDTASKE 1900
>SB_15168| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)
Length = 303
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Frame = -2
Query: 495 SSECFKVASATAAD*-------RGTLVS*GCGCWACSSAILEYSWKCLSLAKATDSESAG 337
+++C+ V AT A R T+ + C++ + A + + KC S+ +AT + +
Sbjct: 23 NTKCYSVTRATVATNTKCYGVTRATVAT-NTKCYSVTRATVATNTKCYSVTRATVATNTK 81
Query: 336 CSGGTSLSIGWKPS-LSAT*STVRT 265
C G T ++ SAT +TV T
Sbjct: 82 CYGVTRATVATNTKCYSATYATVAT 106
>SB_12976| Best HMM Match : MAM (HMM E-Value=1.10002e-41)
Length = 367
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 89 TSCDVSHLETTT-PDPPPKPYVFSYTAGRFPGH 184
TS + L TT P PPP Y+++ +GR PG+
Sbjct: 200 TSAPPTTLATTAVPSPPPGFYLYTEASGRKPGN 232
>SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)
Length = 984
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 362 LAKDRHFQLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSELFRV 505
LAKD + + AEEHAQ ++ R + AV ++LK +++ RV
Sbjct: 125 LAKDDRYSTRTP-AEEHAQGGSIFDAYAGRGACAVVRSSLKTTDIRRV 171
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +2
Query: 362 LAKDRHFQLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSELFRV 505
LAKD + ++ +AEEHAQ ++ R + +V ++LK ++ RV
Sbjct: 405 LAKDDRYSTHT-LAEEHAQLRSKFDAYSGRGACSVVRSSLKTIDIRRV 451
>SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 134 PPKPYVFSYTAG-RFPGHVDREHTEVSDGSGVVRGK 238
P KP +YT G ++ G++ EVSD S RGK
Sbjct: 33 PEKPQYINYTPGHQYSGYMYGAEYEVSDRSPFTRGK 68
>SB_37086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 582
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/71 (22%), Positives = 37/71 (52%)
Frame = -2
Query: 360 ATDSESAGCSGGTSLSIGWKPSLSAT*STVRTL*RGSTYANFPLTTPLPSLTSVCSLSTC 181
A +S + + + ++ KP+ + +T+ ++ R +T + FP + + +VC +ST
Sbjct: 371 AGESPTVHINTNNAANLAQKPTATTQNNTITSISR-NTVSIFPKPSITTQVNTVCDVSTS 429
Query: 180 PGNRPAV*ENT 148
+ P + +NT
Sbjct: 430 KRDTPMLSQNT 440
>SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)
Length = 291
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 243 ANFPLTTPLPSLTSVCSLSTCPGN 172
AN T LPSL CS TCPG+
Sbjct: 187 ANNLNNTKLPSLCGACSNPTCPGD 210
>SB_32773| Best HMM Match : DUF1279 (HMM E-Value=0.45)
Length = 231
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +3
Query: 12 HGHVAVLCAIQRCCATHSFWCWLQA*PVATCLTSRRPRLTLHRSPT 149
HG + + + CC+ F C + L R RL LH PT
Sbjct: 158 HGFLQHIVVVLYCCSPRRFACLSPDRSASATLLLRELRLRLHGRPT 203
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,394,314
Number of Sequences: 59808
Number of extensions: 397953
Number of successful extensions: 1490
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1477
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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