Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0167
         (325 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g34950.1 68418.m04124 replication protein-related weak simila...    26   6.7  
At3g18620.1 68416.m02366 zinc finger (DHHC type) family protein ...    25   8.8  

>At5g34950.1 68418.m04124 replication protein-related weak
           similarity to Replication Protein A 70  kDa DNA-binding
           subunit (RP-A) (RF-A) (Replication factor-A protein 1)
           (Single-stranded DNA-binding protein) (DMRPA1)
           (GI:2498844)(SP:Q24492) [Drosophila melanogaster]
          Length = 234

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 119 GEFGNNMKFNYFKSKFYLL 175
           GE+ NN K N F+ K+Y L
Sbjct: 57  GEYMNNFKTNLFEGKWYYL 75


>At3g18620.1 68416.m02366 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529 DHHC zinc finger domain
          Length = 345

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 76  FIEKIYKFIVYLYCGGIWK*YEI 144
           F+  +  F++++ CGGIW  Y +
Sbjct: 68  FVVILAVFMLFVICGGIWAAYPV 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,223,819
Number of Sequences: 28952
Number of extensions: 57786
Number of successful extensions: 67
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)