Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0166
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    27   1.9  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   5.9  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   7.7  

>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +3

Query: 108 VNQEHTYRSEIGG-IRFIRAKRQIENFDDEYPTASNQDAQEEPSF---WDRVVKVALKLF 275
           +NQE +   E    I   R  R +  FD   P  +++   E  +F   W + +K  +  F
Sbjct: 769 LNQEESSLLEAEATIEGNRTSRYMHTFDTTLPMQNDEFTDESVNFENRWKQELKTPISRF 828

Query: 276 SKFV 287
           SKF+
Sbjct: 829 SKFL 832


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 201  TASNQDAQEEPSFWDRVVKVALKL 272
            TAS  + Q+E +FW+R+V  A+KL
Sbjct: 1029 TASLGNLQQEANFWNRIVD-AIKL 1051


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 566 FFFFFLNYLHYSSTNT 519
           F+ FF+N +HY   NT
Sbjct: 897 FYSFFINNIHYEGENT 912


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,489
Number of Sequences: 5004
Number of extensions: 39955
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)