Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0165
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31352| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   8e-06
SB_12329| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   5e-04
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)               42   7e-04
SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)                   40   0.003
SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_14518| Best HMM Match : MIB_HERC2 (HMM E-Value=2.4e-38)             35   0.061
SB_12327| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46)            32   0.43 
SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0)                    32   0.57 
SB_9785| Best HMM Match : Cytochrom_B_C (HMM E-Value=7.5)              31   1.00 
SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  

>SB_31352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +1

Query: 7   FVPCGHVVACAKCALSTDKCPMCRRTFTNAVRLYF 111
           F PCGHVV C +C+    +CP+CR   T A R++F
Sbjct: 364 FCPCGHVVCCVECSALCKECPLCRSQITYAQRVFF 398


>SB_12329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 12/23 (52%), Positives = 19/23 (82%)
 Frame = +1

Query: 10  VPCGHVVACAKCALSTDKCPMCR 78
           +PCGH+V C +CA++ + CP+CR
Sbjct: 159 IPCGHMVCCEQCAMNLEACPVCR 181


>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
          Length = 474

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 7   FVPCGHVVACAKCALSTDKCPMCRRTFTNAVRLYFS 114
           F PCGH++ C++CA +   CP+C  +     ++YF+
Sbjct: 361 FCPCGHLMFCSRCADNMKFCPLCNESVNGNQKIYFA 396



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 7   FVPCGHVVACAKCALSTDKCPMCRRTFTNAVRLY 108
           F PCGHV  C  CA +   CP+C+   T   R++
Sbjct: 418 FCPCGHVYCCQTCASNLYYCPLCKTFITFVQRIH 451


>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
          Length = 514

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 1   VCFVPCGHVVACAKCALSTDKCPMCR 78
           + F+PCGH+  C  CA   + CPMCR
Sbjct: 483 IVFLPCGHLSCCPGCAEGMELCPMCR 508


>SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 585

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 1   VCFVPCGHVVACAKCALSTDKCPMCRRTFTNAVRLYFS 114
           V  + CGHV +C  CA    +CP+CR      V +Y S
Sbjct: 548 VVLLNCGHVCSCRTCAQQIHQCPVCRGDIVRMVPIYQS 585


>SB_14518| Best HMM Match : MIB_HERC2 (HMM E-Value=2.4e-38)
          Length = 742

 Score = 35.1 bits (77), Expect = 0.061
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 7   FVPCGHVVACAKCALSTDKCPMCRRTFTNAV 99
           F PC H+VAC  C     KC  CR   T  +
Sbjct: 637 FKPCNHMVACEGCGSLMKKCIQCRENITETL 667


>SB_12327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 7   FVPCGHVVACAKCALSTDKCPMCRRTFTNAVRLYF 111
           ++PC H  AC +CAL +  C +C    T   R  F
Sbjct: 29  YLPCLHTEACIECALKSMTCGVCDTVVTRVTRNSF 63


>SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46)
          Length = 1232

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
 Frame = -1

Query: 330 HQFTSLQITNSFLHVNSRVLTSSYTLPHRYQFVNLFNVKITGYAVSFEGWFQHASGPPGE 151
           HQ++ +  + S +H +   +     +  R Q  N   +   GY ++ +G+++  SG    
Sbjct: 64  HQYSHMP-SFSGIHEDCAEIVKELVVRLREQLRNPKVINSQGYLINSQGYYKQHSGGVMG 122

Query: 150 VTSIQLARRV--LSREVEPHRIRE 85
           V +I+L RR+    RE+E   ++E
Sbjct: 123 VRTIKLLRRISLFLREIEVRTLKE 146


>SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0)
          Length = 636

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 7   FVPCGHVVACAKCALSTDKCPMCR 78
           F+PCGH + C +C     KC  C+
Sbjct: 459 FMPCGHSIVCYECGNMFKKCYKCK 482


>SB_9785| Best HMM Match : Cytochrom_B_C (HMM E-Value=7.5)
          Length = 190

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = -1

Query: 330 HQFTSLQITNSFLHVNSRVLTSSYTLPHRYQFVNLFNVKITGYAVSFEGWFQHASGPP 157
           H+F+   I N+FL V+S    S   L   Y FV  F V +  +  S   W+ H  G P
Sbjct: 69  HRFSFQAINNAFLSVDSFFFLS---LTPTYMFVIWFYVSLEPHLGSGPLWYTHQMGNP 123


>SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 92  MRCGSTSRERTLLASCILVTSPGGP 166
           M CG+ + E  + A+CI   +PG P
Sbjct: 207 MACGTCANENAIKAACIWYRAPGSP 231


>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2499

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = +1

Query: 22  HVVACAKCALST----DKCPMCRRTFTNAVRLY 108
           H  AC  CAL+     D CP+CRR     V +Y
Sbjct: 618 HRAACRPCALTVKARGDICPICRRYIDAIVDVY 650


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,450,257
Number of Sequences: 59808
Number of extensions: 413222
Number of successful extensions: 862
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)