Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0165
         (750 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    28   0.27 
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    27   0.62 
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    26   1.1  
AY344830-1|AAR05801.1|  334|Anopheles gambiae ICHIT protein.           23   7.6  
AY344829-1|AAR05800.1|  334|Anopheles gambiae ICHIT protein.           23   7.6  

>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 28.3 bits (60), Expect = 0.27
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 14  RAATWWRAPSARCRRTSARCVAGRSRMRCGSTSRER 121
           R A WW    A+CR   + C+  R +M    +S +R
Sbjct: 269 RRAYWWTTEIAQCR---SHCIEARRKMNRAKSSEQR 301


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 27.1 bits (57), Expect = 0.62
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 14  RAATWWRAPSARCRRTSARCVAGRSRMRCGSTSRERTLLAS 136
           R   WW AP     R    C+A R RMR  +  +ER+L A+
Sbjct: 308 RDVYWW-APVIEELRNE--CIAARERMRLTTDLQERSLAAA 345


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = +2

Query: 68  RCVAGRSRMRCGSTSRERTLLASCILVTSPGGPEAC*NHPSNE 196
           RCV G+   R G T       AS      PGG E C  H + E
Sbjct: 610 RCVCGQCECREGWTGPACDCRASNETCMPPGGGELCSGHGTCE 652


>AY344830-1|AAR05801.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 73  TSGTCPSTARTWRTPPRGRTARST 2
           T+ + P+T  TW   PR  T  +T
Sbjct: 163 TTWSAPTTTTTWSDQPRPPTTTTT 186


>AY344829-1|AAR05800.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 73  TSGTCPSTARTWRTPPRGRTARST 2
           T+ + P+T  TW   PR  T  +T
Sbjct: 163 TTWSAPTTTTTWSDQPRPPTTTTT 186


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 739,947
Number of Sequences: 2352
Number of extensions: 14808
Number of successful extensions: 29
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)