Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0165
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   4.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.3  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   7.1  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   7.1  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   7.1  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   7.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.3  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
 Frame = +1

Query: 61  KCPMCRRTFT--NAVRLYFS*KDPPRE-LYTSHFTGR----P*SVLKPPFERNRVSCDFY 219
           +CP CRR F+   +++ +F  K    + LY   F  R      S+      ++R S    
Sbjct: 7   ECPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQHRGSSGM- 65

Query: 220 IK*IYKLIAVGQCIGTRQNSRVDMQ 294
           +K + K  A+   +G+ Q++++  Q
Sbjct: 66  LKRLLKTTAIKNVLGSMQHAQMQQQ 90


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 658 LDLH*NFITSTGEVKSVKHS 599
           LD+H NFI S G    ++ S
Sbjct: 576 LDIHGNFIESLGNYYKIRDS 595


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 265 FLYIAPPLSICKFI*CKNHRIR 200
           F YI PP S  +FI    +R R
Sbjct: 375 FRYIGPPTSFPRFIPPNAYRFR 396


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 265 FLYIAPPLSICKFI*CKNHRIR 200
           F YI PP S  +FI    +R R
Sbjct: 375 FRYIGPPTSFPRFIPPNAYRFR 396


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 265 FLYIAPPLSICKFI*CKNHRIR 200
           F YI PP S  +FI    +R R
Sbjct: 375 FRYIGPPTSFPRFIPPNAYRFR 396


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 265 FLYIAPPLSICKFI*CKNHRIR 200
           F YI PP S  +FI    +R R
Sbjct: 364 FRYIGPPTSFPRFIPPNAYRFR 385


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/45 (24%), Positives = 18/45 (40%)
 Frame = -2

Query: 143 VYSSRGGSFHEK*SRTAFVNVLRHIGHLSVDSAHLAHATTWPHGT 9
           VYS+ G   H      + ++   H  H    + H  H+T   H +
Sbjct: 408 VYSTPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTPLAHSS 452


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 235 KLIAVGQCIGTRQNSR 282
           +++  GQCI +R+N R
Sbjct: 44  RVLLRGQCISSRRNGR 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,093
Number of Sequences: 438
Number of extensions: 4022
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)