Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0165
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger) fa... 46 3e-05
At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger) fa... 45 6e-05
At2g38185.4 68415.m04692 zinc finger (C3HC4-type RING finger) fa... 42 4e-04
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 41 8e-04
At1g59560.1 68414.m06698 expressed protein contains similarity t... 41 8e-04
At1g10650.1 68414.m01207 expressed protein 39 0.003
At2g38185.3 68415.m04691 zinc finger (C3HC4-type RING finger) fa... 39 0.004
At2g38185.2 68415.m04690 zinc finger (C3HC4-type RING finger) fa... 39 0.004
At2g38185.1 68415.m04689 zinc finger (C3HC4-type RING finger) fa... 39 0.004
At1g60610.2 68414.m06823 expressed protein 39 0.004
At1g60610.1 68414.m06822 expressed protein 39 0.004
At5g47050.1 68418.m05798 expressed protein 38 0.009
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 38 0.009
At5g63970.1 68418.m08032 copine-related low similarity to SP|Q99... 37 0.016
At2g39810.1 68415.m04890 expressed protein 37 0.016
At1g73950.1 68414.m08564 zinc finger (C3HC4-type RING finger) fa... 36 0.022
At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger) fa... 36 0.029
At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger) fa... 36 0.029
At5g04460.1 68418.m00443 expressed protein 36 0.038
At1g79380.1 68414.m09251 copine-related low similarity to SP|Q99... 36 0.038
At1g30860.1 68414.m03774 expressed protein 35 0.050
At1g68820.1 68414.m07868 membrane protein, putative contains 7 t... 35 0.066
At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger) fa... 34 0.12
At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin... 34 0.12
At3g12920.1 68416.m01610 expressed protein 34 0.12
At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger) pr... 34 0.12
At2g21380.1 68415.m02544 kinesin motor protein-related 34 0.12
At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM dom... 33 0.15
At4g03000.2 68417.m00408 expressed protein contains similarity t... 33 0.20
At4g03000.1 68417.m00407 expressed protein contains similarity t... 33 0.20
At5g44690.1 68418.m05476 hypothetical protein 33 0.27
At5g01450.1 68418.m00058 expressed protein 33 0.27
At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger) fa... 33 0.27
At1g18470.1 68414.m02304 zinc finger (C3HC4-type RING finger) fa... 32 0.47
At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contai... 31 0.62
At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger) fa... 31 0.62
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99... 31 0.82
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99... 31 0.82
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99... 31 0.82
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99... 31 0.82
At1g79110.2 68414.m09225 expressed protein 31 0.82
At1g79110.1 68414.m09224 expressed protein 31 0.82
At1g67800.3 68414.m07738 copine-related low similarity to SP|Q99... 31 0.82
At1g67800.2 68414.m07739 copine-related low similarity to SP|Q99... 31 0.82
At1g67800.1 68414.m07737 copine-related low similarity to SP|Q99... 31 0.82
At1g45976.1 68414.m05206 expressed protein 31 0.82
At5g09630.1 68418.m01114 expressed protein 30 1.4
At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99... 30 1.4
At4g17680.1 68417.m02641 expressed protein 30 1.9
At4g35070.1 68417.m04978 expressed protein 29 2.5
At1g55250.1 68414.m06310 expressed protein weak similarity to PU... 29 4.4
At1g32740.1 68414.m04037 expressed protein 28 5.8
At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger) fa... 28 7.6
>At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 46.0 bits (104), Expect = 3e-05
Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 5/41 (12%)
Frame = +1
Query: 7 FVPCGHVVACAKCALSTD-----KCPMCRRTFTNAVRLYFS 114
F+PCGHVV C +CA + + KCP+C ++ ++R+Y+S
Sbjct: 343 FIPCGHVVCCRRCASTVERELNPKCPVCLQSIRGSMRVYYS 383
>At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 343
Score = 44.8 bits (101), Expect = 6e-05
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 7 FVPCGHVVACAKCALSTDKCPMCRRTFTNAVRLY 108
FVPCGH+ C C+ CP+CRR AV+ Y
Sbjct: 308 FVPCGHMCCCTACSSHLTSCPLCRRRIDLAVKTY 341
>At2g38185.4 68415.m04692 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 872
Score = 41.9 bits (94), Expect = 4e-04
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Frame = +1
Query: 4 CFVPCGHVVACAKCAL----STDKCPMCRRTFTNAVRLY 108
CF+PCGH V+C +C + +CP+CR+ + R+Y
Sbjct: 832 CFLPCGHCVSCYQCGTKIKRTKGRCPICRKKIMHVKRIY 870
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = +1
Query: 7 FVPCGHVVACAKCALSTDK----CPMCRRTFTNAVRLY 108
F+PCGH V+C +C + + CP+CRR R+Y
Sbjct: 403 FLPCGHSVSCYECGTTMQEADGSCPICRRKMKKVKRIY 440
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 41.1 bits (92), Expect = 8e-04
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 1 VCFVPCGHVVACAKCALSTDKCPMCRRTFTNAVRLY 108
V VPCGHV+ C C+ S +CP CR +R++
Sbjct: 4670 VTIVPCGHVL-CRHCSTSVSRCPFCRLQVNRTIRIF 4704
>At1g59560.1 68414.m06698 expressed protein contains similarity to
apoptosis inhibitors
Length = 338
Score = 41.1 bits (92), Expect = 8e-04
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 7 FVPCGHVVACAKCALSTDKCPMCRRTFTNAVRLY 108
FV CGH+ C C+L CP+CR +++Y
Sbjct: 303 FVECGHMCCCTPCSLQLRTCPLCRERIQQVLKIY 336
>At1g10650.1 68414.m01207 expressed protein
Length = 339
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 1 VCFVPCGHVVACAKCALSTDKCPMCRRTFTNAVRLYFS 114
V VPC H+ C +C + T CP+C+ ++ V+++FS
Sbjct: 302 VLIVPCRHLSLCKECDVFTKICPVCKSLKSSCVQVFFS 339
>At2g38185.3 68415.m04691 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 346
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = +1
Query: 7 FVPCGHVVACAKCALSTDK----CPMCRRTFTNAVRLY 108
F+PCGH V+C +C + + CP+CRR R+Y
Sbjct: 307 FLPCGHSVSCYECGTTMQEADGSCPICRRKMKKVKRIY 344
>At2g38185.2 68415.m04690 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 441
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = +1
Query: 7 FVPCGHVVACAKCALSTDK----CPMCRRTFTNAVRLY 108
F+PCGH V+C +C + + CP+CRR R+Y
Sbjct: 402 FLPCGHSVSCYECGTTMQEADGSCPICRRKMKKVKRIY 439
>At2g38185.1 68415.m04689 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 441
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = +1
Query: 7 FVPCGHVVACAKCALSTDK----CPMCRRTFTNAVRLY 108
F+PCGH V+C +C + + CP+CRR R+Y
Sbjct: 402 FLPCGHSVSCYECGTTMQEADGSCPICRRKMKKVKRIY 439
>At1g60610.2 68414.m06823 expressed protein
Length = 340
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 1 VCFVPCGHVVACAKCALSTDKCPMCRRTFTNAVRLYF 111
V VPC H+ C C + T CP+C+ T++V+++F
Sbjct: 303 VLLVPCRHLSLCKDCDVFTGVCPVCQSLKTSSVQVFF 339
>At1g60610.1 68414.m06822 expressed protein
Length = 340
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 1 VCFVPCGHVVACAKCALSTDKCPMCRRTFTNAVRLYF 111
V VPC H+ C C + T CP+C+ T++V+++F
Sbjct: 303 VLLVPCRHLSLCKDCDVFTGVCPVCQSLKTSSVQVFF 339
>At5g47050.1 68418.m05798 expressed protein
Length = 300
Score = 37.5 bits (83), Expect = 0.009
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 1 VCFVPCGHVVACAKCALSTDKCPMCRRTFTNAVRLYFS 114
V +PC H+V C +C S CP+C T ++V +++S
Sbjct: 263 VLALPCRHLVMCTECDGSVRICPLCLSTKNSSVEVFYS 300
>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 376
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = +1
Query: 1 VCFVPCGHVVACAKCALSTDK----CPMCRRTFTNAVRLY 108
VC VPCGHV C C + CP+CR ++LY
Sbjct: 336 VC-VPCGHVAGCISCLKEIENKKMGCPVCRANIDQVIKLY 374
>At5g63970.1 68418.m08032 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 367
Score = 36.7 bits (81), Expect = 0.016
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 16 CGHVVACAKCALSTDKCPMCRRTFTNAVRLY 108
CGH C +C + CP+CR+ T +RLY
Sbjct: 337 CGHTT-CKECGVVITTCPLCRQPITTRIRLY 366
>At2g39810.1 68415.m04890 expressed protein
Length = 865
Score = 36.7 bits (81), Expect = 0.016
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 13 PCGHVVACAKCALSTDKCPMCRRT 84
PCGH C +C D CP+CR T
Sbjct: 72 PCGHASLCTECCQRCDVCPICRST 95
>At1g73950.1 68414.m08564 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 466
Score = 36.3 bits (80), Expect = 0.022
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 1 VCFVPCGHVVACAKCALSTDKCPMCRRTFTNAVRLY 108
V +PC H V C C+ KCP CR T + +Y
Sbjct: 429 VVLLPCRHRVLCRNCSDKCKKCPFCRITIEERLPVY 464
>At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 438
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Frame = +1
Query: 1 VCFVPCGHVVACAKCALSTDK----CPMCRRTFTNAVRLY 108
VC VPCGHV C C CP+CR ++LY
Sbjct: 398 VC-VPCGHVAGCMSCLKEIKSKNWGCPVCRAKIDQVIKLY 436
>At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 462
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Frame = +1
Query: 1 VCFVPCGHVVACAKCALSTDK----CPMCRRTFTNAVRLY 108
VC VPCGHV C C CP+CR ++LY
Sbjct: 422 VC-VPCGHVAGCMSCLKEIKSKNWGCPVCRAKIDQVIKLY 460
>At5g04460.1 68418.m00443 expressed protein
Length = 863
Score = 35.5 bits (78), Expect = 0.038
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = +1
Query: 16 CGHVVACAKCA----LSTDKCPMCRRTFTNAVRLY 108
CGH+ C+KCA + KCP+CR +R Y
Sbjct: 826 CGHMCTCSKCANELVRNGGKCPLCRAPIIEVIRAY 860
>At1g79380.1 68414.m09251 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 401
Score = 35.5 bits (78), Expect = 0.038
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 16 CGHVVACAKCALSTDKCPMCRRTFTNAVRLY 108
CGH+ C C CP+CR TN ++LY
Sbjct: 371 CGHMT-CGDCGSKISNCPICRVRITNRLKLY 400
>At1g30860.1 68414.m03774 expressed protein
Length = 730
Score = 35.1 bits (77), Expect = 0.050
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +1
Query: 16 CGHVVACAKCA----LSTDKCPMCRRTFTNAVRLYF 111
CGH+ C KCA S KCP+CR + VR+ +
Sbjct: 691 CGHMCMCLKCANELHWSGGKCPICRAQIVDVVRVIY 726
>At1g68820.1 68414.m07868 membrane protein, putative contains 7
transmembrane domains; similar to inhibitor of
apoptosis-2 IAP-2 (GI:20043383) [Mamestra configurata
nucleopolyhedrovirus]
Length = 468
Score = 34.7 bits (76), Expect = 0.066
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 1 VCFVPCGHVVACAKCALSTDKCPMCRRTFTNAVRLY 108
V +PC H V C+ C KCP+CR + +Y
Sbjct: 431 VVLLPCRHHVLCSTCCEKCKKCPICRVLIEERMPVY 466
>At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 378
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = +1
Query: 10 VPCGHVVACAKCA----LSTDKCPMCRRTFTNAVRL 105
+PC H+ C+ CA T+KCP+CR+ V++
Sbjct: 334 MPCRHLCLCSDCAEELRFQTNKCPICRQPIHELVKI 369
>At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin
motor protein - Ustilago maydis, PID:g2062750; identical
to cDNA MKRP2 mRNA for kinesin-related protein
GI:16902293, kinesin-related protein [Arabidopsis
thaliana] GI:16902294
Length = 1055
Score = 33.9 bits (74), Expect = 0.12
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 10 VPCGHVVACAKCALSTDKCPMCR 78
+PC H C C+L+ +CP+CR
Sbjct: 1021 LPCRHFCLCKSCSLACSECPICR 1043
>At3g12920.1 68416.m01610 expressed protein
Length = 335
Score = 33.9 bits (74), Expect = 0.12
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 1 VCFVPCGHVVACAKCALSTDKCPMCRRTFTNAVRLYFS 114
V +PC H+ C+ C S + CP+C+ T ++ + S
Sbjct: 297 VLLLPCRHMCLCSVCGSSLNTCPICKSPKTASLHVNLS 334
>At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger)
protein-related contains weak hit to Pfam profile:
PF00097 zinc finger, C3HC4 type (RING finger); weak
similarity to RING finger protein 8 (Swiss-Prot:O76064)
[Homo sapiens]
Length = 738
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = +1
Query: 1 VCFVPCGHVVACAKCA---LSTDK--CPMCRRTFTNAVRLY 108
V F+PC H V CA C+ + + K CP CR +R++
Sbjct: 694 VVFLPCAHQVVCASCSDSFMGSGKATCPCCRAPVQQRIRVF 734
>At2g21380.1 68415.m02544 kinesin motor protein-related
Length = 1058
Score = 33.9 bits (74), Expect = 0.12
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 10 VPCGHVVACAKCALSTDKCPMCR 78
+PC H C C+L+ +CP+CR
Sbjct: 1024 LPCRHFCLCKSCSLACSECPICR 1046
>At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM
domain-containing protein contains Pfam profiles
PF00168: C2 domain; contains PF02893: GRAM domain;
similar to Chain A, Crystal Structure Of Synaptotagmin
Iii C2aC2B Length(GI:6980525); similar to Synaptotagmin
III (SytIII) (Swiss-Prot:P40748) [Rattus norvegicus]
Length = 1859
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Frame = +1
Query: 1 VCFVPCGHVVACAKCALSTDK-----CPMCRRTFTNAVRLYFS 114
V F+PC H V C KC +K CP CR T ++ F+
Sbjct: 778 VIFLPCAHQVLCFKCNQLHEKEGMMDCPSCRGTIHRRIQARFA 820
>At4g03000.2 68417.m00408 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Frame = +1
Query: 1 VCFVPCGHVVACAKCALSTDK-----CPMCRRTFTNAVRLYFS 114
V F+PC H V C+KC +K CP CR ++ F+
Sbjct: 770 VIFLPCAHQVLCSKCNQLHEKEAMEDCPSCRAKIQRRIQARFA 812
>At4g03000.1 68417.m00407 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Frame = +1
Query: 1 VCFVPCGHVVACAKCALSTDK-----CPMCRRTFTNAVRLYFS 114
V F+PC H V C+KC +K CP CR ++ F+
Sbjct: 770 VIFLPCAHQVLCSKCNQLHEKEAMEDCPSCRAKIQRRIQARFA 812
>At5g44690.1 68418.m05476 hypothetical protein
Length = 684
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = +1
Query: 16 CGHVVACAKCA----LSTDKCPMCRRTFTNAVRLY 108
CGH+ C KCA S KCP+C + VR +
Sbjct: 647 CGHMCTCLKCAHELQWSNMKCPICMAPIVDVVRAF 681
>At5g01450.1 68418.m00058 expressed protein
Length = 444
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = +1
Query: 7 FVPCGHVVACAKC----ALSTDKCPMCRRTFTNAVRLY 108
F+ CGH VAC +C A ++ CP+CR+ +++
Sbjct: 405 FLSCGHCVACFQCGTRIAETSGFCPVCRKKIRKVKKIF 442
>At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 359
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +1
Query: 10 VPCGHVVACAKCA----LSTDKCPMCRRTFTNAVRLYFS*KD 123
+PC H+ C+ CA L ++KCP+CR+ + + + D
Sbjct: 315 LPCRHLCMCSDCAKELRLQSNKCPICRQPIEELLEIKMNSSD 356
>At1g18470.1 68414.m02304 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 467
Score = 31.9 bits (69), Expect = 0.47
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 10 VPCGHVVACAKCALSTDKCPMCRRTFTNAVRLY 108
+PC H V C CA CP+CR + +Y
Sbjct: 433 LPCRHRVLCRTCADKCTTCPICRIDIEKRLSVY 465
>At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contains
weak similarity to Ubiquitin-protein ligase E3 Mdm2 (EC
6.3.2.-) (p53-binding protein Mdm2) (Oncoprotein Mdm2)
(Double minute 2 protein) (Swiss-Prot:P23804) [Mus
musculus]
Length = 785
Score = 31.5 bits (68), Expect = 0.62
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = +1
Query: 16 CGHVVACAKCA----LSTDKCPMCRRTFTNAVRLY 108
CGH+ C +CA + KCP+C + VR++
Sbjct: 746 CGHMCTCLRCANELQYNGGKCPICHAKILDVVRVF 780
>At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 204
Score = 31.5 bits (68), Expect = 0.62
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = +1
Query: 7 FVPCGHVVACAKCA----LSTDKCPMCRRTFTNAVRLY 108
F+PCGH C C+ ++ CP+C R+ + + LY
Sbjct: 168 FIPCGHTY-CRVCSREIWMNRGTCPLCNRSIFDVLDLY 204
>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 31.1 bits (67), Expect = 0.82
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 16 CGHVVACAKCALSTDKCPMCRRTFTNAVRLY 108
CGH C +C CP+CR ++LY
Sbjct: 439 CGHQTCC-ECGPDLQMCPICRAPIQTRIKLY 468
>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 31.1 bits (67), Expect = 0.82
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 16 CGHVVACAKCALSTDKCPMCRRTFTNAVRLY 108
CGH C +C CP+CR ++LY
Sbjct: 439 CGHQTCC-ECGPDLQMCPICRAPIQTRIKLY 468
>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 31.1 bits (67), Expect = 0.82
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 16 CGHVVACAKCALSTDKCPMCRRTFTNAVRLY 108
CGH C +C CP+CR ++LY
Sbjct: 439 CGHQTCC-ECGPDLQMCPICRAPIQTRIKLY 468
>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 31.1 bits (67), Expect = 0.82
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 16 CGHVVACAKCALSTDKCPMCRRTFTNAVRLY 108
CGH C +C CP+CR ++LY
Sbjct: 439 CGHQTCC-ECGPDLQMCPICRAPIQTRIKLY 468
>At1g79110.2 68414.m09225 expressed protein
Length = 355
Score = 31.1 bits (67), Expect = 0.82
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 1 VCFVPCGHVVACAKCALSTDKCPMC 75
V +PC H+ C C S CP+C
Sbjct: 317 VLLLPCRHLCLCGVCGSSVHTCPIC 341
>At1g79110.1 68414.m09224 expressed protein
Length = 358
Score = 31.1 bits (67), Expect = 0.82
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 1 VCFVPCGHVVACAKCALSTDKCPMC 75
V +PC H+ C C S CP+C
Sbjct: 320 VLLLPCRHLCLCGVCGSSVHTCPIC 344
>At1g67800.3 68414.m07738 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 433
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 16 CGHVVACAKCALSTDKCPMCRRTFTNAVRLY 108
CGH CA C CP+CR + + ++LY
Sbjct: 404 CGHQT-CAGCGEDLHVCPICRSSISVRIKLY 433
>At1g67800.2 68414.m07739 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 453
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 16 CGHVVACAKCALSTDKCPMCRRTFTNAVRLY 108
CGH CA C CP+CR + + ++LY
Sbjct: 424 CGHQT-CAGCGEDLHVCPICRSSISVRIKLY 453
>At1g67800.1 68414.m07737 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 433
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 16 CGHVVACAKCALSTDKCPMCRRTFTNAVRLY 108
CGH CA C CP+CR + + ++LY
Sbjct: 404 CGHQT-CAGCGEDLHVCPICRSSISVRIKLY 433
>At1g45976.1 68414.m05206 expressed protein
Length = 325
Score = 31.1 bits (67), Expect = 0.82
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +1
Query: 10 VPCGHVVACAKCALSTDKCPMCRRTFTNAVRLY 108
+PC H+ C +C CP+C+ + + +Y
Sbjct: 292 LPCNHMCLCKECERKLSSCPLCQSSKFLGMEVY 324
>At5g09630.1 68418.m01114 expressed protein
Length = 386
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
Frame = +1
Query: 10 VPCGHVVA-------CAKCALSTDKCPMC-RRTFTNAVR-LYF 111
+PCGHV++ CA T KCP C T +A R LYF
Sbjct: 344 LPCGHVISKQSMMRLSKNCAFRTFKCPYCPAETLASACRQLYF 386
>At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 489
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 16 CGHVVACAKCALSTDKCPMCRRTFTNAVRLY 108
CGH C +C CP+CR ++LY
Sbjct: 460 CGHQTCC-ECGPDLKVCPICRAPIQTRIKLY 489
>At4g17680.1 68417.m02641 expressed protein
Length = 314
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 1 VCFVPCGHVVACAKCALSTDK-CPMCRRTFTNAVRLYF 111
V +PC H++ C C + + CP+C T+ V + F
Sbjct: 277 VMALPCQHLILCNGCDVGAVRVCPICLAVKTSGVEVLF 314
>At4g35070.1 68417.m04978 expressed protein
Length = 265
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 1 VCFVPCGHVVACAKCALSTDKCPMC 75
V F+PC H+ C C CP+C
Sbjct: 228 VLFLPCRHLCCCMDCEEGLLLCPIC 252
>At1g55250.1 68414.m06310 expressed protein weak similarity to PUMA1
[Parascaris univalens] GI:3068590
Length = 522
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 386 FIYLHFVIRILNNK*NHFNISLQVYKSLTPSCMSTREF 273
+IY + ++N++ +H+N L YK LT + + R F
Sbjct: 373 YIYSSRLYSLINDRIHHWNAELDRYKILTEAIQAERSF 410
>At1g32740.1 68414.m04037 expressed protein
Length = 312
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +1
Query: 1 VCFVPCGHVVACAKCALSTDKCPMCRRTFTNAVRLYF 111
V +PC H+ C C + CP+C ++V F
Sbjct: 275 VVVLPCRHLSICPGCDRTALACPLCLTLRNSSVEAIF 311
>At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger); weak similarity to
interaptin (GI:3549261) [Dictyostelium discoideum] weak
similarity to Axoneme-associated protein mst101(2)
(Swiss-Prot:Q08696) [Drosophila hydei]
Length = 711
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 9/45 (20%)
Frame = +1
Query: 1 VCFVPCGHVVACAKCA---------LSTDKCPMCRRTFTNAVRLY 108
V F+PC H V C C+ S CP CR +R++
Sbjct: 663 VVFLPCAHQVVCGSCSDSFFASNNGGSKVTCPCCRGLVQQRIRIF 707
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,721,546
Number of Sequences: 28952
Number of extensions: 282276
Number of successful extensions: 641
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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