Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0164
         (808 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9G860 Cluster: NADH dehydrogenase subunit 2; n=1; Mala...    34   4.8  
UniRef50_Q890F8 Cluster: Putative uncharacterized protein lp_006...    33   6.4  

>UniRef50_Q9G860 Cluster: NADH dehydrogenase subunit 2; n=1;
           Malawimonas jakobiformis|Rep: NADH dehydrogenase subunit
           2 - Malawimonas jakobiformis
          Length = 494

 Score = 33.9 bits (74), Expect = 4.8
 Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = -1

Query: 334 FLSSSILINIRHLSK*ILLIRIYIFRTNLEIDVA-QIFQSYLL*YQTIYTNGVKV*LNKI 158
           F+S SILI    ++   LLI  YI   NL I V   +  S LL YQ  + N V    N  
Sbjct: 19  FISVSILILYGIINTTSLLINRYIILNNLNILVIFTLLISILLIYQNPFVNNVT--FNNT 76

Query: 157 F*NINFKYYLFIIMSVKAL 101
           F N NF   + II+ + ++
Sbjct: 77  FINDNFINIIKIIVLISSI 95


>UniRef50_Q890F8 Cluster: Putative uncharacterized protein lp_0063;
           n=1; Lactobacillus plantarum|Rep: Putative
           uncharacterized protein lp_0063 - Lactobacillus
           plantarum
          Length = 511

 Score = 33.5 bits (73), Expect = 6.4
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = -2

Query: 579 LTYSWYWYWYNLGICDLGTGITLVFA 502
           LTYSW+ +  ++G+ +LGTG+T + A
Sbjct: 57  LTYSWHGHRQSVGLVNLGTGLTTIIA 82


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 735,160,424
Number of Sequences: 1657284
Number of extensions: 14266755
Number of successful extensions: 33279
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33253
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69554636255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)