Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0164
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        29   1.0  
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    28   1.4  
SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.4  
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ...    27   4.1  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   9.6  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   9.6  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   9.6  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +2

Query: 476 GCSIPNTKIAKTKVIPVPRSQIPRLYQYQYQEYVSDLYDLLE 601
           GC  P+T + K ++ P  RS+   +Y +   + + DL  +++
Sbjct: 690 GCMNPSTDVGKRELEPSFRSRFTEIYVHSPDQNLDDLLSIIQ 731


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 573 YSWYWYWYNLGICDLGTGITL 511
           +SW  Y+Y  GIC L TG+ +
Sbjct: 118 FSWLEYFYRAGICALVTGLDI 138


>SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 125

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 402 DDKDKYCMNCASKNTPCYNAFRFGSAAAYQIPRSQKPRLY 521
           +D  K C++    NTP +N  R G      + RS+  +L+
Sbjct: 35  EDPSKLCISSEKLNTPMHNRSRSGIKKHTSVKRSRSFKLF 74


>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 170

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 523 WYNLGFCDLG 494
           WYN+GFC LG
Sbjct: 113 WYNMGFCPLG 122


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 567 WYWYWYNLGICDLGTGITLVFAILVFGMLQPIQT 466
           W+ YW     C +G  I L F  ++ G++  + T
Sbjct: 888 WHVYWMYFKSCSIGL-ILLYFFFIISGIMMNVAT 920


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 541 YLRSWYWYNLGFCDLGIWYAAA 476
           Y  S+ ++NLG  D G+W AAA
Sbjct: 98  YQPSFEYFNLGNDDQGMWAAAA 119


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/42 (33%), Positives = 16/42 (38%)
 Frame = -3

Query: 308 YTPPIKINTINPYIYFSNELRD*CGANLSKLPTLISNDLYKW 183
           Y P   I   + +I F NEL   CG   S     I   L  W
Sbjct: 584 YPPNNVIYLFSLHIIFHNELESLCGITQSSFIPTIMRQLLDW 625


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,225,936
Number of Sequences: 5004
Number of extensions: 65791
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)